Hb_000175_040

Information

Type -
Description -
Location Contig175: 19734-21455
Sequence    

Annotation

kegg
ID cit:102617226
description uncharacterized LOC102617226
nr
ID KDP37063.1
description hypothetical protein JCGZ_06119 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KPX2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06119 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16664: 19729-21437
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000175_040 0.0 - - hypothetical protein JCGZ_06119 [Jatropha curcas]
2 Hb_003057_130 0.1017152815 - - -
3 Hb_025246_010 0.1192813382 - - -
4 Hb_000699_110 0.1209976325 - - hypothetical protein POPTR_0013s04180g [Populus trichocarpa]
5 Hb_000788_120 0.127974399 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPS2-like [Eucalyptus grandis]
6 Hb_007625_020 0.1322056645 - - PREDICTED: casein kinase II subunit alpha-like [Sesamum indicum]
7 Hb_004502_080 0.1402032075 - - hypothetical protein JCGZ_23578 [Jatropha curcas]
8 Hb_004545_160 0.1406452079 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
9 Hb_001109_120 0.1525849723 - - PREDICTED: acyl-CoA-binding protein-like [Nelumbo nucifera]
10 Hb_003057_050 0.1555116501 - - PREDICTED: uncharacterized protein LOC105635336 [Jatropha curcas]
11 Hb_012305_060 0.1577153487 - - protein translocase, putative [Ricinus communis]
12 Hb_000261_510 0.1616207166 - - PREDICTED: CLAVATA3/ESR (CLE)-related protein TDIF-like [Populus euphratica]
13 Hb_036369_010 0.1638194375 - - -
14 Hb_004724_140 0.1658527125 transcription factor TF Family: NF-YB PREDICTED: receptor protein kinase CLAVATA1 [Jatropha curcas]
15 Hb_019033_010 0.1669536872 - - PREDICTED: uncharacterized protein LOC105643397 [Jatropha curcas]
16 Hb_012395_100 0.1674519904 - - eukaryotic translation initiation factor 4e, putative [Ricinus communis]
17 Hb_150299_030 0.1699579426 - - conserved hypothetical protein [Ricinus communis]
18 Hb_027472_090 0.1732467618 - - -
19 Hb_011931_050 0.1746327481 - - fk506-binding protein, putative [Ricinus communis]
20 Hb_000005_030 0.1746913643 - - hypothetical protein POPTR_0009s00870g [Populus trichocarpa]

Gene co-expression network

sample Hb_000175_040 Hb_000175_040 Hb_003057_130 Hb_003057_130 Hb_000175_040--Hb_003057_130 Hb_025246_010 Hb_025246_010 Hb_000175_040--Hb_025246_010 Hb_000699_110 Hb_000699_110 Hb_000175_040--Hb_000699_110 Hb_000788_120 Hb_000788_120 Hb_000175_040--Hb_000788_120 Hb_007625_020 Hb_007625_020 Hb_000175_040--Hb_007625_020 Hb_004502_080 Hb_004502_080 Hb_000175_040--Hb_004502_080 Hb_003057_130--Hb_025246_010 Hb_003057_130--Hb_000788_120 Hb_012305_060 Hb_012305_060 Hb_003057_130--Hb_012305_060 Hb_000284_010 Hb_000284_010 Hb_003057_130--Hb_000284_010 Hb_000005_030 Hb_000005_030 Hb_003057_130--Hb_000005_030 Hb_003057_050 Hb_003057_050 Hb_025246_010--Hb_003057_050 Hb_036369_010 Hb_036369_010 Hb_025246_010--Hb_036369_010 Hb_001248_020 Hb_001248_020 Hb_025246_010--Hb_001248_020 Hb_025246_010--Hb_000699_110 Hb_000984_190 Hb_000984_190 Hb_025246_010--Hb_000984_190 Hb_001623_240 Hb_001623_240 Hb_000699_110--Hb_001623_240 Hb_000261_510 Hb_000261_510 Hb_000699_110--Hb_000261_510 Hb_000699_110--Hb_003057_050 Hb_004724_140 Hb_004724_140 Hb_000699_110--Hb_004724_140 Hb_000788_120--Hb_012305_060 Hb_027472_090 Hb_027472_090 Hb_000788_120--Hb_027472_090 Hb_000788_120--Hb_025246_010 Hb_001999_120 Hb_001999_120 Hb_000788_120--Hb_001999_120 Hb_004545_160 Hb_004545_160 Hb_007625_020--Hb_004545_160 Hb_007625_020--Hb_012305_060 Hb_007451_030 Hb_007451_030 Hb_007625_020--Hb_007451_030 Hb_000366_100 Hb_000366_100 Hb_007625_020--Hb_000366_100 Hb_007992_030 Hb_007992_030 Hb_007625_020--Hb_007992_030 Hb_000752_060 Hb_000752_060 Hb_007625_020--Hb_000752_060 Hb_029888_020 Hb_029888_020 Hb_004502_080--Hb_029888_020 Hb_004502_080--Hb_003057_050 Hb_004502_080--Hb_003057_130 Hb_019033_010 Hb_019033_010 Hb_004502_080--Hb_019033_010 Hb_004502_080--Hb_025246_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.4697 1.97402 2.37291 1.59756 11.1466 21.7175
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
43.4817 32.4677 3.91441 2.40925 3.78013

CAGE analysis