Hb_000175_090

Information

Type -
Description -
Location Contig175: 59075-62038
Sequence    

Annotation

kegg
ID rcu:RCOM_0900840
description hypothetical protein
nr
ID XP_002517657.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RV88
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0900840 PE=4 SV=1
Gene Ontology
ID GO:0016772
description conserved hypothetical protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16669: 61596-62032 , PASA_asmbl_16670: 59802-62460
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000175_090 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_141532_010 0.0812482047 - - PREDICTED: protein SMG9-like [Jatropha curcas]
3 Hb_004363_010 0.1027930331 - - hypothetical protein CISIN_1g0405721mg, partial [Citrus sinensis]
4 Hb_000976_260 0.1046575649 - - -
5 Hb_012114_060 0.1077610047 - - PREDICTED: uncharacterized protein LOC105645814 [Jatropha curcas]
6 Hb_002292_010 0.1089950689 - - hypothetical protein CICLE_v10029628mg [Citrus clementina]
7 Hb_000261_250 0.1100894095 - - elongation factor 1-alpha [Lepidium sativum]
8 Hb_092337_020 0.1119727733 - - hypothetical protein B456_013G264900 [Gossypium raimondii]
9 Hb_007123_070 0.116413924 - - -
10 Hb_000394_190 0.1188171081 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
11 Hb_001142_050 0.1198787788 - - PREDICTED: coiled-coil domain-containing protein 12 [Jatropha curcas]
12 Hb_000787_170 0.1270430798 - - hypothetical protein POPTR_0005s06400g [Populus trichocarpa]
13 Hb_007007_050 0.1283145628 - - PREDICTED: ubiquitin-related modifier 1 homolog 2 [Malus domestica]
14 Hb_052764_050 0.1293767638 - - PREDICTED: vacuolar protein sorting-associated protein 28 homolog 2 [Jatropha curcas]
15 Hb_002043_090 0.1297679217 - - hypothetical protein JCGZ_24811 [Jatropha curcas]
16 Hb_000529_210 0.1321554484 - - PREDICTED: uncharacterized protein At4g38062 [Jatropha curcas]
17 Hb_012799_110 0.1339704722 - - pre-mRNA cleavage factor im, 25kD subunit, putative [Ricinus communis]
18 Hb_001828_200 0.1349462433 - - ribosomal protein L13 [Populus trichocarpa]
19 Hb_001427_050 0.1350688063 - - PREDICTED: probable protein arginine N-methyltransferase 1.2 [Jatropha curcas]
20 Hb_003467_010 0.1355049472 - - PREDICTED: probable thiol methyltransferase 2 [Jatropha curcas]

Gene co-expression network

sample Hb_000175_090 Hb_000175_090 Hb_141532_010 Hb_141532_010 Hb_000175_090--Hb_141532_010 Hb_004363_010 Hb_004363_010 Hb_000175_090--Hb_004363_010 Hb_000976_260 Hb_000976_260 Hb_000175_090--Hb_000976_260 Hb_012114_060 Hb_012114_060 Hb_000175_090--Hb_012114_060 Hb_002292_010 Hb_002292_010 Hb_000175_090--Hb_002292_010 Hb_000261_250 Hb_000261_250 Hb_000175_090--Hb_000261_250 Hb_141532_010--Hb_002292_010 Hb_001142_050 Hb_001142_050 Hb_141532_010--Hb_001142_050 Hb_141532_010--Hb_004363_010 Hb_005565_040 Hb_005565_040 Hb_141532_010--Hb_005565_040 Hb_007007_050 Hb_007007_050 Hb_141532_010--Hb_007007_050 Hb_004363_010--Hb_002292_010 Hb_004363_010--Hb_000976_260 Hb_003050_200 Hb_003050_200 Hb_004363_010--Hb_003050_200 Hb_008112_040 Hb_008112_040 Hb_004363_010--Hb_008112_040 Hb_007441_210 Hb_007441_210 Hb_004363_010--Hb_007441_210 Hb_004363_010--Hb_007007_050 Hb_000976_260--Hb_001142_050 Hb_000012_020 Hb_000012_020 Hb_000976_260--Hb_000012_020 Hb_000976_260--Hb_000261_250 Hb_000661_140 Hb_000661_140 Hb_000976_260--Hb_000661_140 Hb_002639_150 Hb_002639_150 Hb_000976_260--Hb_002639_150 Hb_000548_050 Hb_000548_050 Hb_012114_060--Hb_000548_050 Hb_012114_060--Hb_005565_040 Hb_052764_050 Hb_052764_050 Hb_012114_060--Hb_052764_050 Hb_000394_190 Hb_000394_190 Hb_012114_060--Hb_000394_190 Hb_001168_040 Hb_001168_040 Hb_012114_060--Hb_001168_040 Hb_000787_170 Hb_000787_170 Hb_012114_060--Hb_000787_170 Hb_002292_010--Hb_007007_050 Hb_001135_020 Hb_001135_020 Hb_002292_010--Hb_001135_020 Hb_002292_010--Hb_002639_150 Hb_003687_230 Hb_003687_230 Hb_002292_010--Hb_003687_230 Hb_000261_250--Hb_000394_190 Hb_002192_080 Hb_002192_080 Hb_000261_250--Hb_002192_080 Hb_000261_250--Hb_001142_050 Hb_000359_330 Hb_000359_330 Hb_000261_250--Hb_000359_330 Hb_003849_060 Hb_003849_060 Hb_000261_250--Hb_003849_060 Hb_106552_050 Hb_106552_050 Hb_000261_250--Hb_106552_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.48983 2.65066 3.16492 1.20951 2.49043 4.04361
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.89898 3.05846 0.855855 0.371065 0.439255

CAGE analysis