Hb_000175_100

Information

Type -
Description -
Location Contig175: 63241-69682
Sequence    

Annotation

kegg
ID rcu:RCOM_0900830
description protein kinase, putative
nr
ID XP_002517656.1
description protein kinase, putative [Ricinus communis]
swissprot
ID Q9FY48
description E3 ubiquitin-protein ligase KEG OS=Arabidopsis thaliana GN=KEG PE=1 SV=2
trembl
ID B9RV87
description Protein kinase, putative OS=Ricinus communis GN=RCOM_0900830 PE=4 SV=1
Gene Ontology
ID GO:0003824
description e3 ubiquitin-protein ligase keg-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16673: 66957-67704 , PASA_asmbl_16674: 70613-70925
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000175_100 0.0 - - protein kinase, putative [Ricinus communis]
2 Hb_000340_400 0.0794413095 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
3 Hb_002641_030 0.0815926681 - - PREDICTED: flowering time control protein FCA isoform X1 [Jatropha curcas]
4 Hb_002585_040 0.0850488453 - - PREDICTED: cell division control protein 48 homolog B [Jatropha curcas]
5 Hb_008959_020 0.0886978264 - - PREDICTED: nitric oxide synthase-interacting protein [Pyrus x bretschneideri]
6 Hb_005116_060 0.0912010908 - - PREDICTED: mitochondrial Rho GTPase 2 isoform X1 [Jatropha curcas]
7 Hb_001329_160 0.0956940865 - - PREDICTED: uncharacterized protein LOC105642679 isoform X1 [Jatropha curcas]
8 Hb_004837_240 0.0978902799 - - PREDICTED: 40S ribosomal protein S2-4-like [Jatropha curcas]
9 Hb_000563_230 0.0984233728 - - phospholipase d zeta, putative [Ricinus communis]
10 Hb_007035_050 0.1002383451 - - PREDICTED: cleavage stimulating factor 64 [Jatropha curcas]
11 Hb_002374_010 0.1002629405 - - PREDICTED: protein translocase subunit SECA2, chloroplastic [Jatropha curcas]
12 Hb_000649_110 0.1026488576 - - PREDICTED: protein VAC14 homolog [Jatropha curcas]
13 Hb_004916_020 0.1043299147 - - PREDICTED: DNA ligase 4 [Jatropha curcas]
14 Hb_002461_060 0.104432662 - - PREDICTED: SWR1-complex protein 4 isoform X3 [Jatropha curcas]
15 Hb_007765_110 0.1047213048 - - PREDICTED: zinc finger CCCH domain-containing protein 40-like [Jatropha curcas]
16 Hb_000976_310 0.1055551247 - - PREDICTED: protein EMSY-LIKE 3 isoform X1 [Jatropha curcas]
17 Hb_010997_080 0.1056723277 transcription factor TF Family: mTERF unnamed protein product [Vitis vinifera]
18 Hb_001723_020 0.1058986183 - - PREDICTED: nuclear export mediator factor Nemf [Jatropha curcas]
19 Hb_003494_200 0.1061013605 - - PREDICTED: beta-1,3-galactosyltransferase 15-like [Jatropha curcas]
20 Hb_000487_210 0.1076720272 - - PREDICTED: uncharacterized protein LOC105641929 [Jatropha curcas]

Gene co-expression network

sample Hb_000175_100 Hb_000175_100 Hb_000340_400 Hb_000340_400 Hb_000175_100--Hb_000340_400 Hb_002641_030 Hb_002641_030 Hb_000175_100--Hb_002641_030 Hb_002585_040 Hb_002585_040 Hb_000175_100--Hb_002585_040 Hb_008959_020 Hb_008959_020 Hb_000175_100--Hb_008959_020 Hb_005116_060 Hb_005116_060 Hb_000175_100--Hb_005116_060 Hb_001329_160 Hb_001329_160 Hb_000175_100--Hb_001329_160 Hb_004837_180 Hb_004837_180 Hb_000340_400--Hb_004837_180 Hb_000340_400--Hb_005116_060 Hb_003001_080 Hb_003001_080 Hb_000340_400--Hb_003001_080 Hb_006478_040 Hb_006478_040 Hb_000340_400--Hb_006478_040 Hb_007035_050 Hb_007035_050 Hb_000340_400--Hb_007035_050 Hb_001359_050 Hb_001359_050 Hb_000340_400--Hb_001359_050 Hb_000920_300 Hb_000920_300 Hb_002641_030--Hb_000920_300 Hb_002374_010 Hb_002374_010 Hb_002641_030--Hb_002374_010 Hb_011537_050 Hb_011537_050 Hb_002641_030--Hb_011537_050 Hb_003529_170 Hb_003529_170 Hb_002641_030--Hb_003529_170 Hb_001723_020 Hb_001723_020 Hb_002641_030--Hb_001723_020 Hb_033642_090 Hb_033642_090 Hb_002641_030--Hb_033642_090 Hb_007576_080 Hb_007576_080 Hb_002585_040--Hb_007576_080 Hb_000563_230 Hb_000563_230 Hb_002585_040--Hb_000563_230 Hb_000487_210 Hb_000487_210 Hb_002585_040--Hb_000487_210 Hb_112798_020 Hb_112798_020 Hb_002585_040--Hb_112798_020 Hb_002296_050 Hb_002296_050 Hb_002585_040--Hb_002296_050 Hb_004032_430 Hb_004032_430 Hb_002585_040--Hb_004032_430 Hb_000003_190 Hb_000003_190 Hb_008959_020--Hb_000003_190 Hb_008959_020--Hb_001329_160 Hb_001546_080 Hb_001546_080 Hb_008959_020--Hb_001546_080 Hb_007765_110 Hb_007765_110 Hb_008959_020--Hb_007765_110 Hb_001080_230 Hb_001080_230 Hb_008959_020--Hb_001080_230 Hb_001266_100 Hb_001266_100 Hb_008959_020--Hb_001266_100 Hb_005116_060--Hb_007035_050 Hb_095296_010 Hb_095296_010 Hb_005116_060--Hb_095296_010 Hb_005116_060--Hb_006478_040 Hb_001030_020 Hb_001030_020 Hb_005116_060--Hb_001030_020 Hb_005116_060--Hb_003001_080 Hb_001838_060 Hb_001838_060 Hb_001329_160--Hb_001838_060 Hb_000976_310 Hb_000976_310 Hb_001329_160--Hb_000976_310 Hb_001329_160--Hb_001080_230 Hb_000395_130 Hb_000395_130 Hb_001329_160--Hb_000395_130 Hb_001329_160--Hb_001546_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.00974 4.43911 2.1563 1.9287 2.54233 2.73059
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.78616 4.1672 1.21605 3.07125 1.63567

CAGE analysis