Hb_000175_130

Information

Type -
Description -
Location Contig175: 88833-93024
Sequence    

Annotation

kegg
ID rcu:RCOM_0900700
description ATP binding protein, putative
nr
ID XP_012073165.1
description PREDICTED: PTI1-like tyrosine-protein kinase At3g15890 [Jatropha curcas]
swissprot
ID Q9LSC2
description PTI1-like tyrosine-protein kinase At3g15890 OS=Arabidopsis thaliana GN=At3g15890 PE=2 SV=1
trembl
ID A0A067KLE8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06127 PE=3 SV=1
Gene Ontology
ID GO:0004674
description pti1-like tyrosine-protein kinase at3g15890

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16679: 88833-92983
cDNA
(Sanger)
(ID:Location)		 015_O17.ab1: 89999-92983 , 029_O05.ab1: 90013-92983 , 042_F07.ab1: 89928-92983

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000175_130 0.0 - - PREDICTED: PTI1-like tyrosine-protein kinase At3g15890 [Jatropha curcas]
2 Hb_000853_240 0.1151082183 - - -
3 Hb_002045_230 0.1166498742 - - Ammonium transporter 2 [Theobroma cacao]
4 Hb_002326_180 0.1200836642 - - Protein Z, putative [Ricinus communis]
5 Hb_000316_100 0.1243018661 - - protein with unknown function [Ricinus communis]
6 Hb_001052_030 0.1266341719 - - PREDICTED: protein TIC 20-IV, chloroplastic [Jatropha curcas]
7 Hb_000696_220 0.1311437305 - - PREDICTED: uncharacterized protein LOC105647113 [Jatropha curcas]
8 Hb_000094_110 0.1345577841 - - conserved hypothetical protein [Ricinus communis]
9 Hb_004129_150 0.1346559242 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-4a-like [Jatropha curcas]
10 Hb_089100_020 0.1398508067 - - PREDICTED: cyclin-A1-1 [Jatropha curcas]
11 Hb_005137_020 0.1399910878 - - PREDICTED: uncharacterized protein LOC101759641 [Setaria italica]
12 Hb_000544_110 0.1406209394 - - PREDICTED: probable calcium-binding protein CML27 [Jatropha curcas]
13 Hb_002918_140 0.1428846546 - - PREDICTED: protein yippee-like At5g53940 [Jatropha curcas]
14 Hb_011689_050 0.1451595483 - - hypothetical protein POPTR_0008s20290g [Populus trichocarpa]
15 Hb_001102_250 0.1480723329 - - PREDICTED: E3 ubiquitin-protein ligase CCNB1IP1 homolog isoform X1 [Jatropha curcas]
16 Hb_002876_360 0.1489504888 - - ubiquitin-conjugating enzyme E2, putative [Ricinus communis]
17 Hb_001386_050 0.1513690637 - - PREDICTED: protein transport protein Sec61 subunit gamma-like [Jatropha curcas]
18 Hb_000035_440 0.1516863076 - - -
19 Hb_034585_050 0.1562909755 - - -
20 Hb_000963_030 0.1570835527 - - PREDICTED: uncharacterized protein LOC105628095 [Jatropha curcas]

Gene co-expression network

sample Hb_000175_130 Hb_000175_130 Hb_000853_240 Hb_000853_240 Hb_000175_130--Hb_000853_240 Hb_002045_230 Hb_002045_230 Hb_000175_130--Hb_002045_230 Hb_002326_180 Hb_002326_180 Hb_000175_130--Hb_002326_180 Hb_000316_100 Hb_000316_100 Hb_000175_130--Hb_000316_100 Hb_001052_030 Hb_001052_030 Hb_000175_130--Hb_001052_030 Hb_000696_220 Hb_000696_220 Hb_000175_130--Hb_000696_220 Hb_000853_240--Hb_000696_220 Hb_001386_050 Hb_001386_050 Hb_000853_240--Hb_001386_050 Hb_003198_010 Hb_003198_010 Hb_000853_240--Hb_003198_010 Hb_000172_420 Hb_000172_420 Hb_000853_240--Hb_000172_420 Hb_000963_030 Hb_000963_030 Hb_000853_240--Hb_000963_030 Hb_000805_130 Hb_000805_130 Hb_000853_240--Hb_000805_130 Hb_002045_230--Hb_001052_030 Hb_002045_230--Hb_002326_180 Hb_005841_040 Hb_005841_040 Hb_002045_230--Hb_005841_040 Hb_000035_440 Hb_000035_440 Hb_002045_230--Hb_000035_440 Hb_000352_140 Hb_000352_140 Hb_002045_230--Hb_000352_140 Hb_000617_050 Hb_000617_050 Hb_002326_180--Hb_000617_050 Hb_000106_090 Hb_000106_090 Hb_002326_180--Hb_000106_090 Hb_001123_120 Hb_001123_120 Hb_002326_180--Hb_001123_120 Hb_000676_240 Hb_000676_240 Hb_002326_180--Hb_000676_240 Hb_002876_360 Hb_002876_360 Hb_002326_180--Hb_002876_360 Hb_010172_100 Hb_010172_100 Hb_000316_100--Hb_010172_100 Hb_001842_080 Hb_001842_080 Hb_000316_100--Hb_001842_080 Hb_006351_110 Hb_006351_110 Hb_000316_100--Hb_006351_110 Hb_005908_040 Hb_005908_040 Hb_000316_100--Hb_005908_040 Hb_027892_040 Hb_027892_040 Hb_000316_100--Hb_027892_040 Hb_146225_010 Hb_146225_010 Hb_001052_030--Hb_146225_010 Hb_000094_110 Hb_000094_110 Hb_001052_030--Hb_000094_110 Hb_005841_050 Hb_005841_050 Hb_001052_030--Hb_005841_050 Hb_002918_140 Hb_002918_140 Hb_001052_030--Hb_002918_140 Hb_000123_160 Hb_000123_160 Hb_001052_030--Hb_000123_160 Hb_000696_220--Hb_003198_010 Hb_089100_020 Hb_089100_020 Hb_000696_220--Hb_089100_020 Hb_000032_350 Hb_000032_350 Hb_000696_220--Hb_000032_350 Hb_000696_220--Hb_000963_030 Hb_000696_220--Hb_001386_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
190.897 56.9118 29.4189 29.9168 49.4837 126.255
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
329.835 876.784 277.752 28.7102 15.5985

CAGE analysis