Hb_000175_190

Information

Type -
Description -
Location Contig175: 121385-122750
Sequence    

Annotation

kegg
ID pop:POPTR_0003s02670g
description hypothetical protein
nr
ID XP_012073167.1
description PREDICTED: phosphatidylcholine:diacylglycerol cholinephosphotransferase 1-like [Jatropha curcas]
swissprot
ID Q9LVZ7
description Phosphatidylcholine:diacylglycerol cholinephosphotransferase 1 OS=Arabidopsis thaliana GN=ROD1 PE=1 SV=1
trembl
ID A0A067KYZ8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06130 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16684: 121328-122915
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000175_190 0.0 - - PREDICTED: phosphatidylcholine:diacylglycerol cholinephosphotransferase 1-like [Jatropha curcas]
2 Hb_000723_340 0.1410624572 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG3 [Jatropha curcas]
3 Hb_027298_030 0.1978223182 - - PREDICTED: histone H1-like [Jatropha curcas]
4 Hb_017845_010 0.2105006152 - - -
5 Hb_002759_110 0.2116814141 - - RNA-binding family protein, putative isoform 1 [Theobroma cacao]
6 Hb_001823_060 0.2117906023 - - fructose-bisphosphate aldolase, putative [Ricinus communis]
7 Hb_097218_020 0.2150888473 - - PREDICTED: replication protein A 70 kDa DNA-binding subunit E [Jatropha curcas]
8 Hb_021079_010 0.2153456967 - - PREDICTED: histone H2B-like [Populus euphratica]
9 Hb_003673_040 0.2172336533 - - dynamin family protein [Populus trichocarpa]
10 Hb_003181_060 0.2225195322 - - PREDICTED: triosephosphate isomerase, cytosolic [Jatropha curcas]
11 Hb_001450_030 0.2245351054 - - PREDICTED: uncharacterized protein LOC105650827 [Jatropha curcas]
12 Hb_007894_050 0.2266874952 - - PREDICTED: reactive Intermediate Deaminase A, chloroplastic [Jatropha curcas]
13 Hb_003929_100 0.2292366386 transcription factor TF Family: M-type PREDICTED: agamous-like MADS-box protein AGL61 [Populus euphratica]
14 Hb_073490_020 0.2303380299 - - hypothetical protein PRUPE_ppa016333mg, partial [Prunus persica]
15 Hb_003126_130 0.2338581185 - - inositol-1-monophosphatase family protein [Populus trichocarpa]
16 Hb_005144_070 0.2399235881 - - conserved hypothetical protein [Ricinus communis]
17 Hb_153269_010 0.2408717226 - - hypothetical protein CICLE_v10029937mg [Citrus clementina]
18 Hb_002631_300 0.240873878 - - PREDICTED: uncharacterized protein LOC105646181 [Jatropha curcas]
19 Hb_002374_300 0.2412964757 - - hypothetical protein JCGZ_12140 [Jatropha curcas]
20 Hb_000008_370 0.2445859516 - - PREDICTED: uncharacterized protein LOC105628095 [Jatropha curcas]

Gene co-expression network

sample Hb_000175_190 Hb_000175_190 Hb_000723_340 Hb_000723_340 Hb_000175_190--Hb_000723_340 Hb_027298_030 Hb_027298_030 Hb_000175_190--Hb_027298_030 Hb_017845_010 Hb_017845_010 Hb_000175_190--Hb_017845_010 Hb_002759_110 Hb_002759_110 Hb_000175_190--Hb_002759_110 Hb_001823_060 Hb_001823_060 Hb_000175_190--Hb_001823_060 Hb_097218_020 Hb_097218_020 Hb_000175_190--Hb_097218_020 Hb_000723_340--Hb_027298_030 Hb_002374_300 Hb_002374_300 Hb_000723_340--Hb_002374_300 Hb_007894_050 Hb_007894_050 Hb_000723_340--Hb_007894_050 Hb_003126_130 Hb_003126_130 Hb_000723_340--Hb_003126_130 Hb_003181_060 Hb_003181_060 Hb_000723_340--Hb_003181_060 Hb_027298_030--Hb_003181_060 Hb_021079_010 Hb_021079_010 Hb_027298_030--Hb_021079_010 Hb_004317_030 Hb_004317_030 Hb_027298_030--Hb_004317_030 Hb_000510_080 Hb_000510_080 Hb_027298_030--Hb_000510_080 Hb_006836_030 Hb_006836_030 Hb_027298_030--Hb_006836_030 Hb_017845_010--Hb_001823_060 Hb_000116_360 Hb_000116_360 Hb_017845_010--Hb_000116_360 Hb_002613_010 Hb_002613_010 Hb_017845_010--Hb_002613_010 Hb_017845_010--Hb_000723_340 Hb_017845_010--Hb_007894_050 Hb_000056_070 Hb_000056_070 Hb_017845_010--Hb_000056_070 Hb_000270_610 Hb_000270_610 Hb_002759_110--Hb_000270_610 Hb_002759_110--Hb_001823_060 Hb_005144_070 Hb_005144_070 Hb_002759_110--Hb_005144_070 Hb_000577_090 Hb_000577_090 Hb_002759_110--Hb_000577_090 Hb_000111_100 Hb_000111_100 Hb_002759_110--Hb_000111_100 Hb_001823_060--Hb_000056_070 Hb_003349_030 Hb_003349_030 Hb_001823_060--Hb_003349_030 Hb_019762_050 Hb_019762_050 Hb_001823_060--Hb_019762_050 Hb_000005_300 Hb_000005_300 Hb_001823_060--Hb_000005_300 Hb_001252_220 Hb_001252_220 Hb_001823_060--Hb_001252_220 Hb_001117_120 Hb_001117_120 Hb_097218_020--Hb_001117_120 Hb_002217_520 Hb_002217_520 Hb_097218_020--Hb_002217_520 Hb_153269_010 Hb_153269_010 Hb_097218_020--Hb_153269_010 Hb_001221_560 Hb_001221_560 Hb_097218_020--Hb_001221_560 Hb_003673_040 Hb_003673_040 Hb_097218_020--Hb_003673_040 Hb_097218_020--Hb_021079_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.00098 0.86576 23.3214 14.7383 0.87608 0.490078
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.4288 32.2312 1.03918 7.70181 18.716

CAGE analysis