Hb_000175_260

Information

Type -
Description -
Location Contig175: 155459-157308
Sequence    

Annotation

kegg
ID pop:POPTR_0001s19290g
description POPTRDRAFT_751886; hypothetical protein
nr
ID XP_011008451.1
description PREDICTED: glucan endo-1,3-beta-glucosidase 14-like [Populus euphratica]
swissprot
ID Q9ZQG9
description Glucan endo-1,3-beta-glucosidase 14 OS=Arabidopsis thaliana GN=At2g27500 PE=1 SV=2
trembl
ID A0A067KPZ7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06139 PE=3 SV=1
Gene Ontology
ID GO:0031225
description glucan endo- -beta-glucosidase 14-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16693: 155367-157318
cDNA
(Sanger)
(ID:Location)		 023_F09.ab1: 156086-157318

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000175_260 0.0 - - PREDICTED: glucan endo-1,3-beta-glucosidase 14-like [Populus euphratica]
2 Hb_001195_070 0.1408470483 - - PREDICTED: protein RER1B-like [Jatropha curcas]
3 Hb_029920_060 0.1653409315 - - PREDICTED: UPF0554 protein-like isoform X2 [Jatropha curcas]
4 Hb_000254_140 0.1662907376 - - PREDICTED: 30S ribosomal protein S17, chloroplastic [Jatropha curcas]
5 Hb_000345_080 0.1675421325 - - PREDICTED: protein RALF-like 33 [Jatropha curcas]
6 Hb_000294_050 0.1750806857 - - PREDICTED: uncharacterized protein LOC105638579 [Jatropha curcas]
7 Hb_000742_030 0.1756262918 - - PREDICTED: uncharacterized protein LOC105636851 [Jatropha curcas]
8 Hb_000007_200 0.1768903152 - - PREDICTED: choline/ethanolaminephosphotransferase 1 [Jatropha curcas]
9 Hb_002477_010 0.1836285898 - - conserved hypothetical protein [Ricinus communis]
10 Hb_008206_100 0.1864988514 - - PREDICTED: uncharacterized protein LOC105638302 [Jatropha curcas]
11 Hb_002205_170 0.1877198517 - - PREDICTED: uncharacterized protein LOC105649179 [Jatropha curcas]
12 Hb_000984_240 0.1888214244 - - hypothetical protein JCGZ_15962 [Jatropha curcas]
13 Hb_001584_240 0.1889161308 - - ADP-ribosylation factor [Gossypium barbadense]
14 Hb_021079_010 0.1900346881 - - PREDICTED: histone H2B-like [Populus euphratica]
15 Hb_000012_110 0.1905762336 - - hypothetical protein CICLE_v10008613mg [Citrus clementina]
16 Hb_000438_140 0.1945379702 - - hypothetical protein CISIN_1g018088mg [Citrus sinensis]
17 Hb_009780_050 0.1959846025 - - PREDICTED: glutathione S-transferase DHAR3, chloroplastic [Jatropha curcas]
18 Hb_000288_020 0.1976510017 - - conserved hypothetical protein [Ricinus communis]
19 Hb_003103_010 0.198500712 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001842_020 0.2043093433 - - PREDICTED: low molecular weight phosphotyrosine protein phosphatase [Jatropha curcas]

Gene co-expression network

sample Hb_000175_260 Hb_000175_260 Hb_001195_070 Hb_001195_070 Hb_000175_260--Hb_001195_070 Hb_029920_060 Hb_029920_060 Hb_000175_260--Hb_029920_060 Hb_000254_140 Hb_000254_140 Hb_000175_260--Hb_000254_140 Hb_000345_080 Hb_000345_080 Hb_000175_260--Hb_000345_080 Hb_000294_050 Hb_000294_050 Hb_000175_260--Hb_000294_050 Hb_000742_030 Hb_000742_030 Hb_000175_260--Hb_000742_030 Hb_008699_030 Hb_008699_030 Hb_001195_070--Hb_008699_030 Hb_015675_030 Hb_015675_030 Hb_001195_070--Hb_015675_030 Hb_001584_240 Hb_001584_240 Hb_001195_070--Hb_001584_240 Hb_003103_010 Hb_003103_010 Hb_001195_070--Hb_003103_010 Hb_000671_130 Hb_000671_130 Hb_001195_070--Hb_000671_130 Hb_001619_060 Hb_001619_060 Hb_029920_060--Hb_001619_060 Hb_001486_040 Hb_001486_040 Hb_029920_060--Hb_001486_040 Hb_185830_060 Hb_185830_060 Hb_029920_060--Hb_185830_060 Hb_001301_280 Hb_001301_280 Hb_029920_060--Hb_001301_280 Hb_000365_010 Hb_000365_010 Hb_029920_060--Hb_000365_010 Hb_020390_010 Hb_020390_010 Hb_029920_060--Hb_020390_010 Hb_004109_160 Hb_004109_160 Hb_000254_140--Hb_004109_160 Hb_001790_030 Hb_001790_030 Hb_000254_140--Hb_001790_030 Hb_000984_240 Hb_000984_240 Hb_000254_140--Hb_000984_240 Hb_000723_290 Hb_000723_290 Hb_000254_140--Hb_000723_290 Hb_007632_170 Hb_007632_170 Hb_000254_140--Hb_007632_170 Hb_020378_060 Hb_020378_060 Hb_000254_140--Hb_020378_060 Hb_000345_080--Hb_000742_030 Hb_020805_140 Hb_020805_140 Hb_000345_080--Hb_020805_140 Hb_000345_080--Hb_001584_240 Hb_000345_080--Hb_000294_050 Hb_003304_110 Hb_003304_110 Hb_000345_080--Hb_003304_110 Hb_000294_050--Hb_001195_070 Hb_007477_050 Hb_007477_050 Hb_000294_050--Hb_007477_050 Hb_000294_050--Hb_003103_010 Hb_006153_030 Hb_006153_030 Hb_000294_050--Hb_006153_030 Hb_008695_220 Hb_008695_220 Hb_000742_030--Hb_008695_220 Hb_000742_030--Hb_001195_070 Hb_002205_170 Hb_002205_170 Hb_000742_030--Hb_002205_170 Hb_000742_030--Hb_000294_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.736443 1.42538 2.40938 8.00854 0.0307343 1.39197
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.33172 5.71299 0.769495 1.2136 6.05542

CAGE analysis