Hb_000175_340

Information

Type -
Description -
Location Contig175: 209643-212719
Sequence    

Annotation

kegg
ID rcu:RCOM_0899640
description hypothetical protein
nr
ID XP_012073189.1
description PREDICTED: uncharacterized protein LOC105634861 isoform X3 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KXU0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06146 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16701: 209683-215258 , PASA_asmbl_16702: 209766-215537 , PASA_asmbl_16703: 212844-213060 , PASA_asmbl_16704: 209684-215255 , PASA_asmbl_16705: 209684-215255
cDNA
(Sanger)
(ID:Location)		 025_M22.ab1: 209685-215258 , 035_M17.ab1: 209795-215537 , 046_K17.ab1: 209707-215258 , 051_M11.ab1: 209766-215537

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000175_340 0.0 - - PREDICTED: uncharacterized protein LOC105634861 isoform X3 [Jatropha curcas]
2 Hb_000403_060 0.0690359103 - - PREDICTED: probable ATP synthase 24 kDa subunit, mitochondrial [Vitis vinifera]
3 Hb_003813_030 0.0804175786 - - PREDICTED: mannose-6-phosphate isomerase 1 [Jatropha curcas]
4 Hb_050514_010 0.0811261038 - - hypothetical protein 29 [Hevea brasiliensis]
5 Hb_026889_030 0.0840070004 - - protein with unknown function [Ricinus communis]
6 Hb_003728_060 0.0849456462 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 4-like [Jatropha curcas]
7 Hb_007044_120 0.0854928148 - - PREDICTED: probable transmembrane ascorbate ferrireductase 2 [Jatropha curcas]
8 Hb_000827_050 0.0898156514 - - PREDICTED: tyrosine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
9 Hb_004109_170 0.0928079101 - - PREDICTED: probable ribokinase [Jatropha curcas]
10 Hb_000465_160 0.0936896016 - - PREDICTED: uncharacterized protein LOC105632297 [Jatropha curcas]
11 Hb_004157_040 0.0937566508 - - Rab2 [Hevea brasiliensis]
12 Hb_011519_010 0.0937689069 - - PREDICTED: uncharacterized protein LOC105645310 [Jatropha curcas]
13 Hb_000580_090 0.0962563224 - - PREDICTED: tRNA 2'-phosphotransferase 1 isoform X1 [Jatropha curcas]
14 Hb_001437_150 0.0963564327 - - PREDICTED: SNF1-related protein kinase regulatory subunit beta-3-like [Jatropha curcas]
15 Hb_148121_040 0.0971786718 transcription factor TF Family: BBR-BPC PREDICTED: protein BASIC PENTACYSTEINE2-like isoform X1 [Jatropha curcas]
16 Hb_004162_130 0.0975128371 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000527_060 0.097529726 - - Protein C20orf11, putative [Ricinus communis]
18 Hb_000260_030 0.0977678505 transcription factor TF Family: IWS1 transcription elongation factor s-II, putative [Ricinus communis]
19 Hb_024439_010 0.0978525412 - - PREDICTED: LAG1 longevity assurance homolog 2 [Jatropha curcas]
20 Hb_118419_010 0.0988779026 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Jatropha curcas]

Gene co-expression network

sample Hb_000175_340 Hb_000175_340 Hb_000403_060 Hb_000403_060 Hb_000175_340--Hb_000403_060 Hb_003813_030 Hb_003813_030 Hb_000175_340--Hb_003813_030 Hb_050514_010 Hb_050514_010 Hb_000175_340--Hb_050514_010 Hb_026889_030 Hb_026889_030 Hb_000175_340--Hb_026889_030 Hb_003728_060 Hb_003728_060 Hb_000175_340--Hb_003728_060 Hb_007044_120 Hb_007044_120 Hb_000175_340--Hb_007044_120 Hb_157022_010 Hb_157022_010 Hb_000403_060--Hb_157022_010 Hb_000638_250 Hb_000638_250 Hb_000403_060--Hb_000638_250 Hb_000403_060--Hb_007044_120 Hb_148121_040 Hb_148121_040 Hb_000403_060--Hb_148121_040 Hb_055062_020 Hb_055062_020 Hb_000403_060--Hb_055062_020 Hb_000580_090 Hb_000580_090 Hb_003813_030--Hb_000580_090 Hb_000827_050 Hb_000827_050 Hb_003813_030--Hb_000827_050 Hb_004109_170 Hb_004109_170 Hb_003813_030--Hb_004109_170 Hb_000236_040 Hb_000236_040 Hb_003813_030--Hb_000236_040 Hb_048476_110 Hb_048476_110 Hb_003813_030--Hb_048476_110 Hb_000260_030 Hb_000260_030 Hb_050514_010--Hb_000260_030 Hb_050514_010--Hb_000827_050 Hb_001300_150 Hb_001300_150 Hb_050514_010--Hb_001300_150 Hb_050514_010--Hb_003728_060 Hb_050514_010--Hb_004109_170 Hb_000465_160 Hb_000465_160 Hb_050514_010--Hb_000465_160 Hb_028872_080 Hb_028872_080 Hb_026889_030--Hb_028872_080 Hb_004889_020 Hb_004889_020 Hb_026889_030--Hb_004889_020 Hb_008071_020 Hb_008071_020 Hb_026889_030--Hb_008071_020 Hb_010361_010 Hb_010361_010 Hb_026889_030--Hb_010361_010 Hb_026889_030--Hb_000827_050 Hb_000676_390 Hb_000676_390 Hb_026889_030--Hb_000676_390 Hb_004162_130 Hb_004162_130 Hb_003728_060--Hb_004162_130 Hb_000375_350 Hb_000375_350 Hb_003728_060--Hb_000375_350 Hb_002871_190 Hb_002871_190 Hb_003728_060--Hb_002871_190 Hb_003728_060--Hb_000260_030 Hb_003728_060--Hb_026889_030 Hb_021596_090 Hb_021596_090 Hb_007044_120--Hb_021596_090 Hb_007044_120--Hb_000638_250 Hb_007044_120--Hb_148121_040 Hb_000120_960 Hb_000120_960 Hb_007044_120--Hb_000120_960
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.5278 10.4601 30.7587 22.669 22.0135 13.8269
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.12 38.3377 39.9894 12.4076 12.57

CAGE analysis