Hb_000175_350

Information

Type -
Description -
Location Contig175: 219729-226545
Sequence    

Annotation

kegg
ID rcu:RCOM_0899520
description phopholipase d alpha, putative (EC:3.1.4.4)
nr
ID XP_002517625.1
description phopholipase d alpha, putative [Ricinus communis]
swissprot
ID Q41142
description Phospholipase D alpha 1 OS=Ricinus communis GN=PLD1 PE=1 SV=1
trembl
ID B9RV56
description Phospholipase D OS=Ricinus communis GN=RCOM_0899520 PE=3 SV=1
Gene Ontology
ID GO:0005773
description phospholipase d alpha 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16706: 219822-226538 , PASA_asmbl_16707: 225968-226471 , PASA_asmbl_16708: 220518-221639 , PASA_asmbl_16709: 223747-224158
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000175_350 0.0 - - phopholipase d alpha, putative [Ricinus communis]
2 Hb_000599_130 0.0682071442 - - PREDICTED: U-box domain-containing protein 3 [Jatropha curcas]
3 Hb_000979_240 0.0854401606 transcription factor TF Family: GRAS PREDICTED: DELLA protein GAIP-B [Jatropha curcas]
4 Hb_178127_010 0.1151829362 - - Ubiquitin ligase SINAT3, putative [Ricinus communis]
5 Hb_000120_420 0.1166716775 - - PREDICTED: AT-rich interactive domain-containing protein 5-like [Jatropha curcas]
6 Hb_005333_030 0.1172209905 - - hypothetical protein JCGZ_15866 [Jatropha curcas]
7 Hb_000120_520 0.1182079744 - - PREDICTED: plant intracellular Ras-group-related LRR protein 4 [Jatropha curcas]
8 Hb_000574_510 0.1195401852 - - protein kinase, putative [Ricinus communis]
9 Hb_000422_110 0.1230458938 - - PREDICTED: uncharacterized protein At1g08160-like [Jatropha curcas]
10 Hb_002666_080 0.1254133513 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
11 Hb_002375_110 0.1271881005 desease resistance Gene Name: NB-ARC unnamed protein product [Coffea canephora]
12 Hb_018301_010 0.1273171459 - - PREDICTED: putative receptor-like protein kinase At4g00960 [Jatropha curcas]
13 Hb_002942_110 0.1287994987 transcription factor TF Family: ARF PREDICTED: auxin response factor 2-like [Jatropha curcas]
14 Hb_000152_640 0.1296162423 - - PREDICTED: monocopper oxidase-like protein SKS1 [Jatropha curcas]
15 Hb_013749_020 0.1301146137 - - PREDICTED: inositol phosphorylceramide glucuronosyltransferase 1 [Jatropha curcas]
16 Hb_004162_120 0.1303183444 - - PREDICTED: vacuolar protein sorting-associated protein 41 homolog [Populus euphratica]
17 Hb_128695_030 0.1304205881 - - heat shock protein, putative [Ricinus communis]
18 Hb_002081_120 0.1305268202 - - PREDICTED: magnesium transporter MRS2-3 [Jatropha curcas]
19 Hb_000932_070 0.1319669289 - - PREDICTED: asparagine synthetase [glutamine-hydrolyzing] 3 [Jatropha curcas]
20 Hb_001369_770 0.1327510117 - - PREDICTED: AT-hook motif nuclear-localized protein 6-like [Jatropha curcas]

Gene co-expression network

sample Hb_000175_350 Hb_000175_350 Hb_000599_130 Hb_000599_130 Hb_000175_350--Hb_000599_130 Hb_000979_240 Hb_000979_240 Hb_000175_350--Hb_000979_240 Hb_178127_010 Hb_178127_010 Hb_000175_350--Hb_178127_010 Hb_000120_420 Hb_000120_420 Hb_000175_350--Hb_000120_420 Hb_005333_030 Hb_005333_030 Hb_000175_350--Hb_005333_030 Hb_000120_520 Hb_000120_520 Hb_000175_350--Hb_000120_520 Hb_001369_770 Hb_001369_770 Hb_000599_130--Hb_001369_770 Hb_018301_010 Hb_018301_010 Hb_000599_130--Hb_018301_010 Hb_002942_110 Hb_002942_110 Hb_000599_130--Hb_002942_110 Hb_004310_040 Hb_004310_040 Hb_000599_130--Hb_004310_040 Hb_000599_130--Hb_000120_420 Hb_001488_270 Hb_001488_270 Hb_000979_240--Hb_001488_270 Hb_000197_290 Hb_000197_290 Hb_000979_240--Hb_000197_290 Hb_000751_140 Hb_000751_140 Hb_000979_240--Hb_000751_140 Hb_000979_240--Hb_000599_130 Hb_000574_510 Hb_000574_510 Hb_000979_240--Hb_000574_510 Hb_001565_020 Hb_001565_020 Hb_178127_010--Hb_001565_020 Hb_128695_030 Hb_128695_030 Hb_178127_010--Hb_128695_030 Hb_005000_300 Hb_005000_300 Hb_178127_010--Hb_005000_300 Hb_178127_010--Hb_000120_420 Hb_178127_010--Hb_018301_010 Hb_011909_060 Hb_011909_060 Hb_178127_010--Hb_011909_060 Hb_000120_420--Hb_011909_060 Hb_000363_280 Hb_000363_280 Hb_000120_420--Hb_000363_280 Hb_000227_310 Hb_000227_310 Hb_000120_420--Hb_000227_310 Hb_000264_080 Hb_000264_080 Hb_000120_420--Hb_000264_080 Hb_167381_020 Hb_167381_020 Hb_000120_420--Hb_167381_020 Hb_003430_030 Hb_003430_030 Hb_000120_420--Hb_003430_030 Hb_002666_080 Hb_002666_080 Hb_005333_030--Hb_002666_080 Hb_003710_040 Hb_003710_040 Hb_005333_030--Hb_003710_040 Hb_005333_030--Hb_167381_020 Hb_004017_040 Hb_004017_040 Hb_005333_030--Hb_004017_040 Hb_118840_050 Hb_118840_050 Hb_005333_030--Hb_118840_050 Hb_000261_290 Hb_000261_290 Hb_005333_030--Hb_000261_290 Hb_000958_150 Hb_000958_150 Hb_000120_520--Hb_000958_150 Hb_000152_640 Hb_000152_640 Hb_000120_520--Hb_000152_640 Hb_000700_060 Hb_000700_060 Hb_000120_520--Hb_000700_060 Hb_002284_170 Hb_002284_170 Hb_000120_520--Hb_002284_170 Hb_013749_020 Hb_013749_020 Hb_000120_520--Hb_013749_020 Hb_056987_010 Hb_056987_010 Hb_000120_520--Hb_056987_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
239.606 508.876 144.808 207.44 244.904 216.338
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
59.6604 16.6912 69.8331 168.74 93.1051

CAGE analysis