Hb_000175_370

Information

Type -
Description -
Location Contig175: 241723-244883
Sequence    

Annotation

kegg
ID zma:103631239
description phospholipase D alpha 1-like
nr
ID KCW70692.1
description hypothetical protein EUGRSUZ_F03862 [Eucalyptus grandis]
swissprot
ID Q09706
description Phospholipase D1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pld1 PE=1 SV=1
trembl
ID A0A059BX43
description Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F03862 PE=4 SV=1
Gene Ontology
ID GO:0005773
description phospholipase d alpha 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000175_370 0.0 - - hypothetical protein EUGRSUZ_F03862 [Eucalyptus grandis]
2 Hb_002186_170 0.0839850576 - - hypothetical protein POPTR_0067s00200g [Populus trichocarpa]
3 Hb_000120_560 0.0896176054 - - protein with unknown function [Ricinus communis]
4 Hb_000139_390 0.0938684112 - - -
5 Hb_001500_020 0.0954630142 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
6 Hb_006351_050 0.0964630535 - - PREDICTED: uncharacterized protein LOC105133646 [Populus euphratica]
7 Hb_000172_450 0.0965349938 - - Uncharacterized protein TCM_001203 [Theobroma cacao]
8 Hb_000098_230 0.1023070126 - - Potassium channel AKT2/3, putative [Ricinus communis]
9 Hb_003023_030 0.1073132399 - - PREDICTED: MATE efflux family protein 5-like isoform X1 [Citrus sinensis]
10 Hb_000646_040 0.1075766262 - - PREDICTED: thiamine-repressible mitochondrial transport protein THI74-like [Jatropha curcas]
11 Hb_002053_020 0.1100474243 - - PREDICTED: MATE efflux family protein DTX1 [Jatropha curcas]
12 Hb_007919_010 0.1105583197 - - conserved hypothetical protein [Ricinus communis]
13 Hb_084304_010 0.1113623855 - - PREDICTED: probable auxin efflux carrier component 1c isoform X2 [Jatropha curcas]
14 Hb_009079_020 0.1157690397 - - PREDICTED: protein WALLS ARE THIN 1 [Jatropha curcas]
15 Hb_003427_070 0.1159000772 - - hypothetical protein POPTR_0067s00310g [Populus trichocarpa]
16 Hb_005784_050 0.1161625727 - - WD-repeat protein, putative [Ricinus communis]
17 Hb_002186_110 0.1168808776 - - hypothetical protein CICLE_v10024045mg, partial [Citrus clementina]
18 Hb_001541_170 0.117189611 - - hypothetical protein JCGZ_17850 [Jatropha curcas]
19 Hb_000614_120 0.118081396 - - hypothetical protein JCGZ_17923 [Jatropha curcas]
20 Hb_002260_140 0.1185934894 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000175_370 Hb_000175_370 Hb_002186_170 Hb_002186_170 Hb_000175_370--Hb_002186_170 Hb_000120_560 Hb_000120_560 Hb_000175_370--Hb_000120_560 Hb_000139_390 Hb_000139_390 Hb_000175_370--Hb_000139_390 Hb_001500_020 Hb_001500_020 Hb_000175_370--Hb_001500_020 Hb_006351_050 Hb_006351_050 Hb_000175_370--Hb_006351_050 Hb_000172_450 Hb_000172_450 Hb_000175_370--Hb_000172_450 Hb_000098_230 Hb_000098_230 Hb_002186_170--Hb_000098_230 Hb_000422_060 Hb_000422_060 Hb_002186_170--Hb_000422_060 Hb_001541_170 Hb_001541_170 Hb_002186_170--Hb_001541_170 Hb_003582_030 Hb_003582_030 Hb_002186_170--Hb_003582_030 Hb_000646_040 Hb_000646_040 Hb_002186_170--Hb_000646_040 Hb_000120_560--Hb_000646_040 Hb_000614_120 Hb_000614_120 Hb_000120_560--Hb_000614_120 Hb_003023_030 Hb_003023_030 Hb_000120_560--Hb_003023_030 Hb_000120_560--Hb_000139_390 Hb_000120_560--Hb_002186_170 Hb_004112_070 Hb_004112_070 Hb_000139_390--Hb_004112_070 Hb_004474_070 Hb_004474_070 Hb_000139_390--Hb_004474_070 Hb_001953_010 Hb_001953_010 Hb_000139_390--Hb_001953_010 Hb_000684_110 Hb_000684_110 Hb_000139_390--Hb_000684_110 Hb_001500_020--Hb_006351_050 Hb_180088_010 Hb_180088_010 Hb_001500_020--Hb_180088_010 Hb_003598_050 Hb_003598_050 Hb_001500_020--Hb_003598_050 Hb_112950_010 Hb_112950_010 Hb_001500_020--Hb_112950_010 Hb_135757_030 Hb_135757_030 Hb_001500_020--Hb_135757_030 Hb_001500_020--Hb_000172_450 Hb_006351_050--Hb_180088_010 Hb_006351_050--Hb_003598_050 Hb_000497_080 Hb_000497_080 Hb_006351_050--Hb_000497_080 Hb_006351_050--Hb_112950_010 Hb_007919_010 Hb_007919_010 Hb_006351_050--Hb_007919_010 Hb_002260_140 Hb_002260_140 Hb_000172_450--Hb_002260_140 Hb_000172_450--Hb_006351_050 Hb_000172_450--Hb_180088_010 Hb_000172_450--Hb_135757_030 Hb_000172_450--Hb_112950_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00835135 1.28291 1.16288 6.94329 0.0318121 0.00730244
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00592767 0.949968

CAGE analysis