Hb_000175_390

Information

Type -
Description -
Location Contig175: 280173-282108
Sequence    

Annotation

kegg
ID rcu:RCOM_1676960
description DNA-directed RNA polymerase III subunit F, putative
nr
ID XP_002509507.1
description DNA-directed RNA polymerase III subunit F, putative [Ricinus communis]
swissprot
ID Q921X6
description DNA-directed RNA polymerase III subunit RPC6 OS=Mus musculus GN=Polr3f PE=1 SV=1
trembl
ID B9RBH3
description DNA-directed RNA polymerase III subunit F, putative OS=Ricinus communis GN=RCOM_1676960 PE=4 SV=1
Gene Ontology
ID GO:0009507
description dna-directed rna polymerase iii subunit rpc6-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16710: 280069-282007
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000175_390 0.0 - - DNA-directed RNA polymerase III subunit F, putative [Ricinus communis]
2 Hb_004102_100 0.0647200088 - - PREDICTED: periodic tryptophan protein 2 homolog [Jatropha curcas]
3 Hb_000088_200 0.0711683508 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
4 Hb_009411_020 0.0789989481 - - PREDICTED: eukaryotic translation initiation factor 3 subunit E [Populus euphratica]
5 Hb_004044_020 0.0833608647 - - PREDICTED: nudix hydrolase 19, chloroplastic [Jatropha curcas]
6 Hb_007534_040 0.0834274693 - - PREDICTED: uncharacterized protein LOC105635538 [Jatropha curcas]
7 Hb_000156_140 0.08567642 - - Ribosomal protein L18ae/LX family protein [Theobroma cacao]
8 Hb_005237_060 0.0859190357 transcription factor TF Family: ERF ERF/AP2 domain-containing transcription factor [Manihot esculenta]
9 Hb_073171_080 0.0880614686 - - PREDICTED: MMS19 nucleotide excision repair protein homolog isoform X1 [Jatropha curcas]
10 Hb_000684_420 0.0883912687 transcription factor TF Family: C3H zinc finger protein, putative [Ricinus communis]
11 Hb_000072_140 0.0892645229 - - -
12 Hb_001663_110 0.0904273426 - - RNA binding protein, putative [Ricinus communis]
13 Hb_001616_090 0.0915600484 - - PREDICTED: E3 ubiquitin-protein ligase RNF4 isoform X2 [Jatropha curcas]
14 Hb_000209_090 0.0926183919 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
15 Hb_000803_110 0.0954500733 - - PREDICTED: RNA-binding protein 8A [Jatropha curcas]
16 Hb_175612_010 0.0967742831 transcription factor TF Family: MBF1 orf [Ricinus communis]
17 Hb_003091_010 0.098793794 - - PREDICTED: uncharacterized protein LOC105131887 [Populus euphratica]
18 Hb_004525_100 0.0991081302 - - hypothetical protein JCGZ_18418 [Jatropha curcas]
19 Hb_000035_400 0.0997401924 - - PREDICTED: lariat debranching enzyme-like [Citrus sinensis]
20 Hb_000236_280 0.100178079 - - PREDICTED: coiled-coil domain-containing protein 22 homolog isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000175_390 Hb_000175_390 Hb_004102_100 Hb_004102_100 Hb_000175_390--Hb_004102_100 Hb_000088_200 Hb_000088_200 Hb_000175_390--Hb_000088_200 Hb_009411_020 Hb_009411_020 Hb_000175_390--Hb_009411_020 Hb_004044_020 Hb_004044_020 Hb_000175_390--Hb_004044_020 Hb_007534_040 Hb_007534_040 Hb_000175_390--Hb_007534_040 Hb_000156_140 Hb_000156_140 Hb_000175_390--Hb_000156_140 Hb_073171_080 Hb_073171_080 Hb_004102_100--Hb_073171_080 Hb_004102_100--Hb_000088_200 Hb_004724_360 Hb_004724_360 Hb_004102_100--Hb_004724_360 Hb_000684_420 Hb_000684_420 Hb_004102_100--Hb_000684_420 Hb_000035_400 Hb_000035_400 Hb_004102_100--Hb_000035_400 Hb_000088_200--Hb_004044_020 Hb_004525_100 Hb_004525_100 Hb_000088_200--Hb_004525_100 Hb_000236_280 Hb_000236_280 Hb_000088_200--Hb_000236_280 Hb_000072_140 Hb_000072_140 Hb_000088_200--Hb_000072_140 Hb_178968_100 Hb_178968_100 Hb_000088_200--Hb_178968_100 Hb_009411_020--Hb_000156_140 Hb_001616_090 Hb_001616_090 Hb_009411_020--Hb_001616_090 Hb_002774_070 Hb_002774_070 Hb_009411_020--Hb_002774_070 Hb_024714_020 Hb_024714_020 Hb_009411_020--Hb_024714_020 Hb_001969_040 Hb_001969_040 Hb_009411_020--Hb_001969_040 Hb_000186_280 Hb_000186_280 Hb_009411_020--Hb_000186_280 Hb_004044_020--Hb_000684_420 Hb_004044_020--Hb_000236_280 Hb_031939_010 Hb_031939_010 Hb_004044_020--Hb_031939_010 Hb_012305_070 Hb_012305_070 Hb_004044_020--Hb_012305_070 Hb_004044_020--Hb_004525_100 Hb_175612_010 Hb_175612_010 Hb_007534_040--Hb_175612_010 Hb_007534_040--Hb_000035_400 Hb_000209_090 Hb_000209_090 Hb_007534_040--Hb_000209_090 Hb_000732_020 Hb_000732_020 Hb_007534_040--Hb_000732_020 Hb_001754_170 Hb_001754_170 Hb_007534_040--Hb_001754_170 Hb_000156_140--Hb_002774_070 Hb_000165_030 Hb_000165_030 Hb_000156_140--Hb_000165_030 Hb_004204_200 Hb_004204_200 Hb_000156_140--Hb_004204_200 Hb_000997_020 Hb_000997_020 Hb_000156_140--Hb_000997_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
41.6513 15.7086 13.457 6.3812 45.4384 58.4583
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.1112 25.3846 13.5581 7.12189 7.26539

CAGE analysis