Hb_000175_400

Information

Type -
Description -
Location Contig175: 283033-283936
Sequence    

Annotation

kegg
ID rcu:RCOM_0899170
description hypothetical protein
nr
ID XP_002517620.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RV51
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0899170 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16711: 282926-283050 , PASA_asmbl_16712: 283884-284271
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000175_400 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000193_350 0.0739128584 - - eukaryotic translation initiation factor 5A isoform VI [Hevea brasiliensis]
3 Hb_002259_030 0.0877508624 - - conserved hypothetical protein [Ricinus communis]
4 Hb_004453_150 0.0879816488 - - BnaC02g13240D [Brassica napus]
5 Hb_025193_050 0.0916086455 - - PREDICTED: uncharacterized protein LOC105647290 isoform X1 [Jatropha curcas]
6 Hb_011016_090 0.0924639966 - - PREDICTED: 50S ribosomal protein L24, chloroplastic [Populus euphratica]
7 Hb_000089_130 0.093143951 - - mitochondrial ribosomal protein S16, putative [Ricinus communis]
8 Hb_011161_040 0.0942478619 - - PREDICTED: uncharacterized protein LOC105638905 isoform X2 [Jatropha curcas]
9 Hb_000032_540 0.0961650487 - - PREDICTED: mediator-associated protein 3-like [Jatropha curcas]
10 Hb_017711_010 0.0970124341 - - PREDICTED: mitochondrial import receptor subunit TOM9-2 [Jatropha curcas]
11 Hb_102156_010 0.0981465521 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002259_150 0.0995321461 - - BnaC04g40780D [Brassica napus]
13 Hb_000189_530 0.1039931949 - - 40S ribosomal protein S24B [Hevea brasiliensis]
14 Hb_000061_330 0.1072968893 - - eukaryotic translation initiation factor 5A isoform VII [Hevea brasiliensis]
15 Hb_011139_020 0.1091633301 - - Mitochondrial import receptor subunit TOM7-1, putative [Ricinus communis]
16 Hb_000243_010 0.1108718229 - - PREDICTED: uncharacterized protein LOC105639166 [Jatropha curcas]
17 Hb_000152_430 0.1124405849 - - PREDICTED: 40S ribosomal protein S20-1 [Jatropha curcas]
18 Hb_001057_050 0.1134610026 - - hypothetical protein POPTR_0003s15960g, partial [Populus trichocarpa]
19 Hb_004007_100 0.1159804128 - - PREDICTED: 60S ribosomal protein L26-1 [Jatropha curcas]
20 Hb_005224_050 0.1168110047 - - PREDICTED: uncharacterized protein LOC105632350 [Jatropha curcas]

Gene co-expression network

sample Hb_000175_400 Hb_000175_400 Hb_000193_350 Hb_000193_350 Hb_000175_400--Hb_000193_350 Hb_002259_030 Hb_002259_030 Hb_000175_400--Hb_002259_030 Hb_004453_150 Hb_004453_150 Hb_000175_400--Hb_004453_150 Hb_025193_050 Hb_025193_050 Hb_000175_400--Hb_025193_050 Hb_011016_090 Hb_011016_090 Hb_000175_400--Hb_011016_090 Hb_000089_130 Hb_000089_130 Hb_000175_400--Hb_000089_130 Hb_003687_020 Hb_003687_020 Hb_000193_350--Hb_003687_020 Hb_005224_050 Hb_005224_050 Hb_000193_350--Hb_005224_050 Hb_000189_530 Hb_000189_530 Hb_000193_350--Hb_000189_530 Hb_017711_010 Hb_017711_010 Hb_000193_350--Hb_017711_010 Hb_000193_350--Hb_011016_090 Hb_000032_540 Hb_000032_540 Hb_002259_030--Hb_000032_540 Hb_002259_030--Hb_011016_090 Hb_002259_030--Hb_004453_150 Hb_000156_130 Hb_000156_130 Hb_002259_030--Hb_000156_130 Hb_001454_140 Hb_001454_140 Hb_002259_030--Hb_001454_140 Hb_015057_010 Hb_015057_010 Hb_004453_150--Hb_015057_010 Hb_011161_040 Hb_011161_040 Hb_004453_150--Hb_011161_040 Hb_004453_150--Hb_025193_050 Hb_007193_100 Hb_007193_100 Hb_004453_150--Hb_007193_100 Hb_002272_260 Hb_002272_260 Hb_004453_150--Hb_002272_260 Hb_000175_070 Hb_000175_070 Hb_004453_150--Hb_000175_070 Hb_012515_010 Hb_012515_010 Hb_025193_050--Hb_012515_010 Hb_011139_020 Hb_011139_020 Hb_025193_050--Hb_011139_020 Hb_024650_050 Hb_024650_050 Hb_025193_050--Hb_024650_050 Hb_004595_020 Hb_004595_020 Hb_025193_050--Hb_004595_020 Hb_000152_430 Hb_000152_430 Hb_025193_050--Hb_000152_430 Hb_011016_090--Hb_000189_530 Hb_011016_090--Hb_004453_150 Hb_011016_090--Hb_000032_540 Hb_001454_330 Hb_001454_330 Hb_000089_130--Hb_001454_330 Hb_009026_050 Hb_009026_050 Hb_000089_130--Hb_009026_050 Hb_000563_590 Hb_000563_590 Hb_000089_130--Hb_000563_590 Hb_000089_130--Hb_011139_020 Hb_000089_130--Hb_000152_430 Hb_001019_090 Hb_001019_090 Hb_000089_130--Hb_001019_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.89835 0.922678 0.359158 1.09704 2.68863 8.25594
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.46917 7.2785 3.36501 1.33724 0.246791

CAGE analysis