Hb_000175_450

Information

Type -
Description -
Location Contig175: 319208-321676
Sequence    

Annotation

kegg
ID rcu:RCOM_0898890
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012073209.1
description PREDICTED: pentatricopeptide repeat-containing protein At1g52620 [Jatropha curcas]
swissprot
ID Q9SSR4
description Pentatricopeptide repeat-containing protein At1g52620 OS=Arabidopsis thaliana GN=At1g52620 PE=2 SV=1
trembl
ID E6NUC1
description JHL06P13.11 protein OS=Jatropha curcas GN=JHL06P13.11 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16714: 313612-318423 , PASA_asmbl_16716: 319912-320516
cDNA
(Sanger)
(ID:Location)		 045_N02.ab1: 313644-318210

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000175_450 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At1g52620 [Jatropha curcas]
2 Hb_001159_100 0.0781217587 - - PREDICTED: pentatricopeptide repeat-containing protein At4g22760 [Jatropha curcas]
3 Hb_000754_060 0.0851330954 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 69 isoform X1 [Jatropha curcas]
4 Hb_001913_010 0.0886386718 - - phosphatidylinositol n-acetylglucosaminyltransferase subunit p, putative [Ricinus communis]
5 Hb_000500_040 0.0894713816 - - conserved hypothetical protein [Ricinus communis]
6 Hb_029584_130 0.0899835861 - - PREDICTED: uncharacterized protein LOC105637865 [Jatropha curcas]
7 Hb_000953_010 0.090634229 - - hypothetical protein CISIN_1g0425012mg, partial [Citrus sinensis]
8 Hb_000836_360 0.091417359 - - PREDICTED: uncharacterized protein LOC105642935 isoform X2 [Jatropha curcas]
9 Hb_000554_020 0.0950218804 - - PREDICTED: pentatricopeptide repeat-containing protein At2g02980-like [Jatropha curcas]
10 Hb_000190_140 0.1015155331 transcription factor TF Family: TRAF PREDICTED: ETO1-like protein 1 [Jatropha curcas]
11 Hb_175338_030 0.1020510557 - - PREDICTED: uncharacterized protein LOC105648015 [Jatropha curcas]
12 Hb_007951_050 0.1025149076 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
13 Hb_010381_070 0.1033579007 - - PREDICTED: protein STU1-like [Jatropha curcas]
14 Hb_004109_200 0.1050390449 - - PREDICTED: protein OSB2, chloroplastic-like [Jatropha curcas]
15 Hb_001274_030 0.1061683799 - - PREDICTED: uncharacterized protein LOC105628035 [Jatropha curcas]
16 Hb_001511_020 0.1070966627 - - PREDICTED: peroxisome biogenesis protein 22 [Jatropha curcas]
17 Hb_003861_080 0.1082642732 - - PREDICTED: DNA polymerase kappa isoform X2 [Jatropha curcas]
18 Hb_000890_040 0.1086188126 - - PREDICTED: pentatricopeptide repeat-containing protein At4g15720 [Jatropha curcas]
19 Hb_000078_180 0.108879187 - - PREDICTED: uncharacterized protein LOC105641312 [Jatropha curcas]
20 Hb_002477_160 0.1089656653 - - hypothetical protein L484_013453 [Morus notabilis]

Gene co-expression network

sample Hb_000175_450 Hb_000175_450 Hb_001159_100 Hb_001159_100 Hb_000175_450--Hb_001159_100 Hb_000754_060 Hb_000754_060 Hb_000175_450--Hb_000754_060 Hb_001913_010 Hb_001913_010 Hb_000175_450--Hb_001913_010 Hb_000500_040 Hb_000500_040 Hb_000175_450--Hb_000500_040 Hb_029584_130 Hb_029584_130 Hb_000175_450--Hb_029584_130 Hb_000953_010 Hb_000953_010 Hb_000175_450--Hb_000953_010 Hb_001159_100--Hb_029584_130 Hb_007951_050 Hb_007951_050 Hb_001159_100--Hb_007951_050 Hb_000776_110 Hb_000776_110 Hb_001159_100--Hb_000776_110 Hb_002496_030 Hb_002496_030 Hb_001159_100--Hb_002496_030 Hb_000427_050 Hb_000427_050 Hb_001159_100--Hb_000427_050 Hb_000022_250 Hb_000022_250 Hb_001159_100--Hb_000022_250 Hb_000190_140 Hb_000190_140 Hb_000754_060--Hb_000190_140 Hb_000120_950 Hb_000120_950 Hb_000754_060--Hb_000120_950 Hb_002477_160 Hb_002477_160 Hb_000754_060--Hb_002477_160 Hb_000754_060--Hb_007951_050 Hb_010381_070 Hb_010381_070 Hb_000754_060--Hb_010381_070 Hb_000554_020 Hb_000554_020 Hb_000754_060--Hb_000554_020 Hb_001511_020 Hb_001511_020 Hb_001913_010--Hb_001511_020 Hb_002399_010 Hb_002399_010 Hb_001913_010--Hb_002399_010 Hb_001274_030 Hb_001274_030 Hb_001913_010--Hb_001274_030 Hb_004109_200 Hb_004109_200 Hb_001913_010--Hb_004109_200 Hb_001913_010--Hb_010381_070 Hb_000162_090 Hb_000162_090 Hb_001913_010--Hb_000162_090 Hb_001274_020 Hb_001274_020 Hb_000500_040--Hb_001274_020 Hb_000056_100 Hb_000056_100 Hb_000500_040--Hb_000056_100 Hb_002026_100 Hb_002026_100 Hb_000500_040--Hb_002026_100 Hb_000500_040--Hb_000953_010 Hb_000836_360 Hb_000836_360 Hb_000500_040--Hb_000836_360 Hb_000007_150 Hb_000007_150 Hb_029584_130--Hb_000007_150 Hb_034585_060 Hb_034585_060 Hb_029584_130--Hb_034585_060 Hb_000297_200 Hb_000297_200 Hb_029584_130--Hb_000297_200 Hb_029584_130--Hb_000754_060 Hb_029584_130--Hb_000427_050 Hb_000803_190 Hb_000803_190 Hb_000953_010--Hb_000803_190 Hb_004734_060 Hb_004734_060 Hb_000953_010--Hb_004734_060 Hb_000953_010--Hb_000836_360 Hb_000173_400 Hb_000173_400 Hb_000953_010--Hb_000173_400 Hb_033152_080 Hb_033152_080 Hb_000953_010--Hb_033152_080 Hb_156850_030 Hb_156850_030 Hb_000953_010--Hb_156850_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.53133 1.57584 0.659079 0.38087 1.32133 2.45874
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.54022 1.67703 2.65904 0.610048 0.41926

CAGE analysis