Hb_000175_460

Information

Type -
Description -
Location Contig175: 323721-328259
Sequence    

Annotation

kegg
ID cit:102629612
description uncharacterized LOC102629612
nr
ID XP_012073210.1
description PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
swissprot
ID Q8W486
description Uncharacterized protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=2 SV=1
trembl
ID A0A067KXV6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06161 PE=4 SV=1
Gene Ontology
ID GO:0016757
description o-fucosyltransferase family protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16720: 323820-324951 , PASA_asmbl_16721: 325849-328130
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000175_460 0.0 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
2 Hb_003862_050 0.0531778476 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105641042 [Jatropha curcas]
3 Hb_002105_040 0.0583659643 - - -
4 Hb_000510_320 0.0623426872 - - PREDICTED: uncharacterized protein LOC105649907 [Jatropha curcas]
5 Hb_032208_090 0.0673871244 - - PREDICTED: serine/threonine-protein phosphatase PP2A catalytic subunit [Jatropha curcas]
6 Hb_003092_040 0.0711130463 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 3 isoform X2 [Pyrus x bretschneideri]
7 Hb_000876_070 0.0711994512 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
8 Hb_001009_270 0.0719295448 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 6 homolog [Jatropha curcas]
9 Hb_000008_470 0.072793611 - - calcium/calmodulin-dependent protein kinase kinase, putative [Ricinus communis]
10 Hb_000030_300 0.0730081295 - - Thioredoxin, putative [Ricinus communis]
11 Hb_031527_040 0.0736392918 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X1 [Jatropha curcas]
12 Hb_005663_060 0.0740221499 - - PREDICTED: uncharacterized protein LOC105770600 [Gossypium raimondii]
13 Hb_007813_040 0.0741216522 - - PREDICTED: mediator of RNA polymerase II transcription subunit 34 isoform X2 [Jatropha curcas]
14 Hb_000512_060 0.074466876 - - PREDICTED: F-box/WD-40 repeat-containing protein At5g21040 [Jatropha curcas]
15 Hb_001305_010 0.0755337647 - - PREDICTED: 1-acyl-sn-glycerol-3-phosphate acyltransferase 1, chloroplastic [Jatropha curcas]
16 Hb_002830_030 0.0757080522 - - PREDICTED: CDK5RAP3-like protein [Jatropha curcas]
17 Hb_001242_060 0.0758142682 - - PREDICTED: uncharacterized protein LOC105139508 [Populus euphratica]
18 Hb_000086_400 0.0760589117 - - calmodulin binding protein, putative [Ricinus communis]
19 Hb_003417_020 0.0769998872 - - PREDICTED: 50S ribosomal protein L13, chloroplastic [Jatropha curcas]
20 Hb_001799_210 0.0773326302 - - PREDICTED: COP9 signalosome complex subunit 7 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000175_460 Hb_000175_460 Hb_003862_050 Hb_003862_050 Hb_000175_460--Hb_003862_050 Hb_002105_040 Hb_002105_040 Hb_000175_460--Hb_002105_040 Hb_000510_320 Hb_000510_320 Hb_000175_460--Hb_000510_320 Hb_032208_090 Hb_032208_090 Hb_000175_460--Hb_032208_090 Hb_003092_040 Hb_003092_040 Hb_000175_460--Hb_003092_040 Hb_000876_070 Hb_000876_070 Hb_000175_460--Hb_000876_070 Hb_019654_100 Hb_019654_100 Hb_003862_050--Hb_019654_100 Hb_007813_040 Hb_007813_040 Hb_003862_050--Hb_007813_040 Hb_005348_140 Hb_005348_140 Hb_003862_050--Hb_005348_140 Hb_002496_030 Hb_002496_030 Hb_003862_050--Hb_002496_030 Hb_000010_400 Hb_000010_400 Hb_003862_050--Hb_000010_400 Hb_002105_040--Hb_005348_140 Hb_002105_040--Hb_000510_320 Hb_005663_060 Hb_005663_060 Hb_002105_040--Hb_005663_060 Hb_002105_040--Hb_000876_070 Hb_004724_080 Hb_004724_080 Hb_002105_040--Hb_004724_080 Hb_000086_400 Hb_000086_400 Hb_000510_320--Hb_000086_400 Hb_004738_040 Hb_004738_040 Hb_000510_320--Hb_004738_040 Hb_000510_320--Hb_000876_070 Hb_181288_020 Hb_181288_020 Hb_000510_320--Hb_181288_020 Hb_001009_270 Hb_001009_270 Hb_032208_090--Hb_001009_270 Hb_000579_140 Hb_000579_140 Hb_032208_090--Hb_000579_140 Hb_000451_010 Hb_000451_010 Hb_032208_090--Hb_000451_010 Hb_032208_090--Hb_003092_040 Hb_011344_210 Hb_011344_210 Hb_032208_090--Hb_011344_210 Hb_000618_040 Hb_000618_040 Hb_032208_090--Hb_000618_040 Hb_007416_280 Hb_007416_280 Hb_003092_040--Hb_007416_280 Hb_003092_040--Hb_005663_060 Hb_000510_130 Hb_000510_130 Hb_003092_040--Hb_000510_130 Hb_007691_030 Hb_007691_030 Hb_003092_040--Hb_007691_030 Hb_032202_190 Hb_032202_190 Hb_003092_040--Hb_032202_190 Hb_003126_050 Hb_003126_050 Hb_003092_040--Hb_003126_050 Hb_002739_100 Hb_002739_100 Hb_000876_070--Hb_002739_100 Hb_005779_060 Hb_005779_060 Hb_000876_070--Hb_005779_060 Hb_002046_180 Hb_002046_180 Hb_000876_070--Hb_002046_180 Hb_000876_070--Hb_032202_190 Hb_000876_070--Hb_007691_030 Hb_005618_170 Hb_005618_170 Hb_000876_070--Hb_005618_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.60861 3.28205 3.21898 3.45622 5.04192 4.99498
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.70809 5.84465 7.91362 2.97545 2.11498

CAGE analysis