Hb_000175_480

Information

Type -
Description -
Location Contig175: 336882-337208
Sequence    

Annotation

kegg
ID pop:POPTR_0003s06080g
description hypothetical protein
nr
ID KDP37109.1
description hypothetical protein JCGZ_06165 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KZ34
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06165 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000175_480 0.0 - - hypothetical protein JCGZ_06165 [Jatropha curcas]
2 Hb_027634_010 0.0860103536 - - protein binding protein, putative [Ricinus communis]
3 Hb_002042_200 0.0967114002 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
4 Hb_000441_170 0.0992714987 - - PREDICTED: uncharacterized protein LOC105636851 [Jatropha curcas]
5 Hb_002232_400 0.1056511423 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH25-like [Jatropha curcas]
6 Hb_002900_070 0.1057821024 - - conserved hypothetical protein [Ricinus communis]
7 Hb_098795_010 0.1083436766 - - PREDICTED: naringenin,2-oxoglutarate 3-dioxygenase-like [Jatropha curcas]
8 Hb_000948_070 0.1234001614 - - hypothetical protein POPTR_0016s01720g [Populus trichocarpa]
9 Hb_003786_060 0.1263371649 - - PREDICTED: transmembrane protein 220 [Jatropha curcas]
10 Hb_004021_100 0.1280003907 - - -
11 Hb_006006_070 0.1314696043 - - UDP-glucosyltransferase, putative [Ricinus communis]
12 Hb_166813_010 0.1358784868 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
13 Hb_001971_070 0.1359832877 - - unnamed protein product [Coffea canephora]
14 Hb_001959_030 0.136512868 - - conserved hypothetical protein [Ricinus communis]
15 Hb_018133_110 0.1365285874 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
16 Hb_164162_020 0.138078694 - - PREDICTED: uncharacterized protein LOC105646964 [Jatropha curcas]
17 Hb_000556_140 0.1385220154 transcription factor TF Family: GRF PREDICTED: growth-regulating factor 9 [Jatropha curcas]
18 Hb_006538_070 0.1387754513 - - hypothetical protein JCGZ_18339 [Jatropha curcas]
19 Hb_006538_050 0.1393989101 - - hypothetical protein RCOM_1308310 [Ricinus communis]
20 Hb_000567_310 0.1410170389 - - Miraculin precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000175_480 Hb_000175_480 Hb_027634_010 Hb_027634_010 Hb_000175_480--Hb_027634_010 Hb_002042_200 Hb_002042_200 Hb_000175_480--Hb_002042_200 Hb_000441_170 Hb_000441_170 Hb_000175_480--Hb_000441_170 Hb_002232_400 Hb_002232_400 Hb_000175_480--Hb_002232_400 Hb_002900_070 Hb_002900_070 Hb_000175_480--Hb_002900_070 Hb_098795_010 Hb_098795_010 Hb_000175_480--Hb_098795_010 Hb_027634_010--Hb_002042_200 Hb_001623_400 Hb_001623_400 Hb_027634_010--Hb_001623_400 Hb_018133_110 Hb_018133_110 Hb_027634_010--Hb_018133_110 Hb_001959_030 Hb_001959_030 Hb_027634_010--Hb_001959_030 Hb_004122_030 Hb_004122_030 Hb_027634_010--Hb_004122_030 Hb_002042_200--Hb_001623_400 Hb_002042_200--Hb_018133_110 Hb_017491_040 Hb_017491_040 Hb_002042_200--Hb_017491_040 Hb_002042_200--Hb_001959_030 Hb_000441_170--Hb_002900_070 Hb_000441_170--Hb_002232_400 Hb_006006_070 Hb_006006_070 Hb_000441_170--Hb_006006_070 Hb_002272_160 Hb_002272_160 Hb_000441_170--Hb_002272_160 Hb_000441_170--Hb_098795_010 Hb_076895_020 Hb_076895_020 Hb_000441_170--Hb_076895_020 Hb_002232_400--Hb_006006_070 Hb_002232_400--Hb_076895_020 Hb_002232_370 Hb_002232_370 Hb_002232_400--Hb_002232_370 Hb_002232_400--Hb_002900_070 Hb_000438_190 Hb_000438_190 Hb_002232_400--Hb_000438_190 Hb_000948_070 Hb_000948_070 Hb_002900_070--Hb_000948_070 Hb_002900_070--Hb_006006_070 Hb_002110_270 Hb_002110_270 Hb_002900_070--Hb_002110_270 Hb_002900_070--Hb_076895_020 Hb_006538_050 Hb_006538_050 Hb_098795_010--Hb_006538_050 Hb_098795_010--Hb_002272_160 Hb_000003_470 Hb_000003_470 Hb_098795_010--Hb_000003_470 Hb_003786_060 Hb_003786_060 Hb_098795_010--Hb_003786_060 Hb_003052_070 Hb_003052_070 Hb_098795_010--Hb_003052_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.26778 39.0257 16.4513 50.2441 0.120764 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.304134 0 0 218.559 0.386846

CAGE analysis