Hb_000175_490

Information

Type -
Description -
Location Contig175: 340147-343880
Sequence    

Annotation

kegg
ID rcu:RCOM_0898800
description Polygalacturonase precursor, putative (EC:3.2.1.67)
nr
ID XP_012073215.1
description PREDICTED: probable polygalacturonase At1g80170 isoform X1 [Jatropha curcas]
swissprot
ID Q94AJ5
description Probable polygalacturonase At1g80170 OS=Arabidopsis thaliana GN=At1g80170 PE=1 SV=1
trembl
ID A0A067KLJ0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06167 PE=3 SV=1
Gene Ontology
ID GO:0005576
description probable polygalacturonase at1g80170 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16725: 340337-343985
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000175_490 0.0 - - PREDICTED: probable polygalacturonase At1g80170 isoform X1 [Jatropha curcas]
2 Hb_000768_030 0.0549595549 - - PREDICTED: ELMO domain-containing protein A isoform X1 [Jatropha curcas]
3 Hb_023226_060 0.0757056144 - - unnamed protein product [Vitis vinifera]
4 Hb_000997_020 0.087839812 - - PREDICTED: uncharacterized protein LOC105629694 [Jatropha curcas]
5 Hb_004032_050 0.0890559898 - - hypothetical protein CISIN_1g014592mg [Citrus sinensis]
6 Hb_182026_010 0.0909132395 - - hypothetical protein CICLE_v10003487mg, partial [Citrus clementina]
7 Hb_002276_190 0.0944181271 - - PREDICTED: uncharacterized protein LOC105640686 [Jatropha curcas]
8 Hb_005288_160 0.0998938059 - - PREDICTED: uncharacterized protein LOC105647746 isoform X1 [Jatropha curcas]
9 Hb_000733_060 0.1003465284 - - PREDICTED: protein GUCD1 isoform X1 [Jatropha curcas]
10 Hb_005928_060 0.1018684157 - - DNA-directed RNA polymerase III 25 kD polypeptide, putative [Ricinus communis]
11 Hb_000172_120 0.1021992802 - - PREDICTED: uncharacterized protein LOC105650770 isoform X1 [Jatropha curcas]
12 Hb_003453_020 0.1024381269 - - PREDICTED: histidine biosynthesis bifunctional protein hisIE, chloroplastic [Jatropha curcas]
13 Hb_001623_580 0.1062483198 - - PREDICTED: histone-lysine N-methyltransferase family member SUVH9-like [Jatropha curcas]
14 Hb_022256_040 0.1128364451 - - PREDICTED: probable E3 ubiquitin-protein ligase rbrA isoform X2 [Jatropha curcas]
15 Hb_000176_110 0.113834788 - - PREDICTED: serine--tRNA ligase [Jatropha curcas]
16 Hb_001427_170 0.1142550676 - - PREDICTED: 40S ribosomal protein S15a-5-like [Populus euphratica]
17 Hb_011644_020 0.1144727484 - - PREDICTED: choline-phosphate cytidylyltransferase 2 [Vitis vinifera]
18 Hb_003605_070 0.1145921676 - - PREDICTED: angio-associated migratory cell protein [Jatropha curcas]
19 Hb_004678_020 0.1152754663 - - PREDICTED: protein YIF1B [Jatropha curcas]
20 Hb_004096_170 0.1155897207 - - PREDICTED: uncharacterized protein DDB_G0275933 [Jatropha curcas]

Gene co-expression network

sample Hb_000175_490 Hb_000175_490 Hb_000768_030 Hb_000768_030 Hb_000175_490--Hb_000768_030 Hb_023226_060 Hb_023226_060 Hb_000175_490--Hb_023226_060 Hb_000997_020 Hb_000997_020 Hb_000175_490--Hb_000997_020 Hb_004032_050 Hb_004032_050 Hb_000175_490--Hb_004032_050 Hb_182026_010 Hb_182026_010 Hb_000175_490--Hb_182026_010 Hb_002276_190 Hb_002276_190 Hb_000175_490--Hb_002276_190 Hb_000733_060 Hb_000733_060 Hb_000768_030--Hb_000733_060 Hb_000768_030--Hb_023226_060 Hb_003453_020 Hb_003453_020 Hb_000768_030--Hb_003453_020 Hb_000768_030--Hb_004032_050 Hb_003384_030 Hb_003384_030 Hb_000768_030--Hb_003384_030 Hb_023226_060--Hb_000733_060 Hb_005288_160 Hb_005288_160 Hb_023226_060--Hb_005288_160 Hb_022256_040 Hb_022256_040 Hb_023226_060--Hb_022256_040 Hb_011644_020 Hb_011644_020 Hb_023226_060--Hb_011644_020 Hb_001741_140 Hb_001741_140 Hb_000997_020--Hb_001741_140 Hb_002997_170 Hb_002997_170 Hb_000997_020--Hb_002997_170 Hb_000905_190 Hb_000905_190 Hb_000997_020--Hb_000905_190 Hb_143629_010 Hb_143629_010 Hb_000997_020--Hb_143629_010 Hb_005928_060 Hb_005928_060 Hb_000997_020--Hb_005928_060 Hb_000997_020--Hb_003453_020 Hb_004032_050--Hb_002276_190 Hb_000307_170 Hb_000307_170 Hb_004032_050--Hb_000307_170 Hb_001623_580 Hb_001623_580 Hb_004032_050--Hb_001623_580 Hb_003605_070 Hb_003605_070 Hb_004032_050--Hb_003605_070 Hb_002997_100 Hb_002997_100 Hb_182026_010--Hb_002997_100 Hb_000340_510 Hb_000340_510 Hb_182026_010--Hb_000340_510 Hb_182026_010--Hb_022256_040 Hb_002631_050 Hb_002631_050 Hb_182026_010--Hb_002631_050 Hb_002818_040 Hb_002818_040 Hb_182026_010--Hb_002818_040 Hb_006029_010 Hb_006029_010 Hb_182026_010--Hb_006029_010 Hb_002276_190--Hb_003605_070 Hb_002276_190--Hb_001623_580 Hb_002276_190--Hb_005288_160 Hb_002276_190--Hb_000768_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.278 3.24512 5.13748 5.22201 28.8046 18.0863
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.9632 10.0313 8.90093 2.4072 2.78165

CAGE analysis