Hb_000175_520

Information

Type -
Description -
Location Contig175: 369692-370813
Sequence    

Annotation

kegg
ID rcu:RCOM_0898450
description ubiquitin-protein ligase, putative
nr
ID XP_002517599.1
description ubiquitin-protein ligase, putative [Ricinus communis]
swissprot
ID Q39090
description Protein UNUSUAL FLORAL ORGANS OS=Arabidopsis thaliana GN=UFO PE=1 SV=2
trembl
ID B9RV30
description Ubiquitin-protein ligase, putative OS=Ricinus communis GN=RCOM_0898450 PE=4 SV=1
Gene Ontology
ID GO:0016874
description protein unusual floral organs-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16733: 369592-370755 , PASA_asmbl_16734: 370813-371083
cDNA
(Sanger)
(ID:Location)		 020_L14.ab1: 369988-370755 , 046_B12.ab1: 369999-370748

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000175_520 0.0 - - ubiquitin-protein ligase, putative [Ricinus communis]
2 Hb_004852_020 0.0749121 - - -
3 Hb_002518_250 0.081773591 - - conserved hypothetical protein 10 [Hevea brasiliensis]
4 Hb_002942_030 0.0943931325 - - hypothetical protein EUGRSUZ_K000651 [Eucalyptus grandis]
5 Hb_012395_100 0.1041339157 - - eukaryotic translation initiation factor 4e, putative [Ricinus communis]
6 Hb_000933_140 0.1066562685 - - PREDICTED: uncharacterized protein LOC105630501 [Jatropha curcas]
7 Hb_007317_220 0.114253432 - - hypothetical protein JCGZ_12701 [Jatropha curcas]
8 Hb_023675_010 0.1144973037 - - -
9 Hb_017895_050 0.1168027138 - - PREDICTED: LOW QUALITY PROTEIN: UPF0160 protein MYG1, mitochondrial [Jatropha curcas]
10 Hb_002374_340 0.1178542111 - - Two-component response regulator ARR9, putative [Ricinus communis]
11 Hb_001504_170 0.118975179 - - plant poly(A)+ RNA export protein, putative [Ricinus communis]
12 Hb_002863_010 0.1208595127 - - PREDICTED: probable E3 ubiquitin-protein ligase RNF144A-B [Jatropha curcas]
13 Hb_003453_010 0.12186071 - - conserved hypothetical protein [Ricinus communis]
14 Hb_178345_010 0.128039068 - - hypothetical protein PHAVU_004G084200g [Phaseolus vulgaris]
15 Hb_004545_160 0.1298871375 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
16 Hb_013479_020 0.1310855442 - - PREDICTED: probable E3 ubiquitin-protein ligase RNF144A-B [Jatropha curcas]
17 Hb_000977_140 0.1324093557 - - PREDICTED: uncharacterized protein LOC105801335 [Gossypium raimondii]
18 Hb_007992_030 0.1324449271 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105646951 [Jatropha curcas]
19 Hb_000193_230 0.1333088149 - - PREDICTED: NEP1-interacting protein-like 2 isoform X1 [Jatropha curcas]
20 Hb_004813_010 0.1346211012 - - nucleic acid binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000175_520 Hb_000175_520 Hb_004852_020 Hb_004852_020 Hb_000175_520--Hb_004852_020 Hb_002518_250 Hb_002518_250 Hb_000175_520--Hb_002518_250 Hb_002942_030 Hb_002942_030 Hb_000175_520--Hb_002942_030 Hb_012395_100 Hb_012395_100 Hb_000175_520--Hb_012395_100 Hb_000933_140 Hb_000933_140 Hb_000175_520--Hb_000933_140 Hb_007317_220 Hb_007317_220 Hb_000175_520--Hb_007317_220 Hb_004852_020--Hb_007317_220 Hb_004852_020--Hb_002942_030 Hb_023675_010 Hb_023675_010 Hb_004852_020--Hb_023675_010 Hb_004852_020--Hb_002518_250 Hb_001248_020 Hb_001248_020 Hb_004852_020--Hb_001248_020 Hb_003453_010 Hb_003453_010 Hb_002518_250--Hb_003453_010 Hb_001437_040 Hb_001437_040 Hb_002518_250--Hb_001437_040 Hb_002518_250--Hb_000933_140 Hb_017895_050 Hb_017895_050 Hb_002518_250--Hb_017895_050 Hb_001504_170 Hb_001504_170 Hb_002942_030--Hb_001504_170 Hb_013479_020 Hb_013479_020 Hb_002942_030--Hb_013479_020 Hb_026048_090 Hb_026048_090 Hb_002942_030--Hb_026048_090 Hb_001433_170 Hb_001433_170 Hb_002942_030--Hb_001433_170 Hb_012395_100--Hb_001248_020 Hb_012395_100--Hb_023675_010 Hb_036369_010 Hb_036369_010 Hb_012395_100--Hb_036369_010 Hb_004545_160 Hb_004545_160 Hb_012395_100--Hb_004545_160 Hb_012395_100--Hb_004852_020 Hb_008016_010 Hb_008016_010 Hb_000933_140--Hb_008016_010 Hb_000933_140--Hb_026048_090 Hb_000933_140--Hb_001437_040 Hb_007992_030 Hb_007992_030 Hb_000933_140--Hb_007992_030 Hb_098709_010 Hb_098709_010 Hb_000933_140--Hb_098709_010 Hb_002374_340 Hb_002374_340 Hb_007317_220--Hb_002374_340 Hb_017134_040 Hb_017134_040 Hb_007317_220--Hb_017134_040 Hb_007317_220--Hb_000933_140 Hb_007317_220--Hb_008016_010 Hb_007317_220--Hb_023675_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
199.078 14.4016 15.1573 7.06063 242.268 237.506
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
295.801 165.609 81.3283 14.7264 10.6284

CAGE analysis