Hb_000175_540

Information

Type -
Description -
Location Contig175: 378117-382778
Sequence    

Annotation

kegg
ID tcc:TCM_038032
description Amino-acid racemase isoform 1
nr
ID XP_012073221.1
description PREDICTED: uncharacterized protein LOC105634886 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A061GV22
description Amino-acid racemase isoform 1 OS=Theobroma cacao GN=TCM_038032 PE=4 SV=1
Gene Ontology
ID GO:0009507
description amino-acid racemase isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16738: 377183-377340 , PASA_asmbl_16739: 377344-382402
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000175_540 0.0 - - PREDICTED: uncharacterized protein LOC105634886 [Jatropha curcas]
2 Hb_001215_040 0.0806044733 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000504_070 0.0835774184 - - PREDICTED: pescadillo homolog isoform X1 [Jatropha curcas]
4 Hb_004453_050 0.0895511553 - - PREDICTED: uncharacterized protein LOC105637675 [Jatropha curcas]
5 Hb_028227_070 0.0898342843 - - PREDICTED: uncharacterized protein LOC105644820 isoform X2 [Jatropha curcas]
6 Hb_109002_020 0.1010190902 - - PREDICTED: CTP synthase-like [Jatropha curcas]
7 Hb_000023_280 0.102295385 - - hypothetical protein POPTR_0006s28210g [Populus trichocarpa]
8 Hb_008173_110 0.1031995477 - - DNA binding protein, putative [Ricinus communis]
9 Hb_001123_060 0.1040368463 - - PREDICTED: ALBINO3-like protein 2, chloroplastic [Jatropha curcas]
10 Hb_000312_080 0.1060139642 - - PREDICTED: transmembrane protein 97-like [Jatropha curcas]
11 Hb_003777_320 0.1078377253 - - PREDICTED: U3 small nucleolar RNA-associated protein 15 homolog [Jatropha curcas]
12 Hb_000645_090 0.1088789434 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001545_170 0.1088877944 - - PREDICTED: cleavage stimulating factor 64 isoform X1 [Jatropha curcas]
14 Hb_001633_210 0.1089056036 - - PREDICTED: RING finger protein 10 isoform X2 [Jatropha curcas]
15 Hb_010423_030 0.1098627921 - - PREDICTED: uncharacterized protein LOC105645584 [Jatropha curcas]
16 Hb_000210_120 0.1106109154 - - PREDICTED: uncharacterized protein LOC105635829 isoform X1 [Jatropha curcas]
17 Hb_000120_470 0.1127031763 - - hypothetical protein VITISV_017372 [Vitis vinifera]
18 Hb_005914_170 0.1129484494 - - PREDICTED: eukaryotic translation initiation factor isoform 4E-2-like [Gossypium raimondii]
19 Hb_089032_030 0.1130162091 - - PREDICTED: 3-isopropylmalate dehydrogenase 2, chloroplastic-like [Jatropha curcas]
20 Hb_008770_030 0.1132468324 - - PREDICTED: MACPF domain-containing protein At4g24290-like [Jatropha curcas]

Gene co-expression network

sample Hb_000175_540 Hb_000175_540 Hb_001215_040 Hb_001215_040 Hb_000175_540--Hb_001215_040 Hb_000504_070 Hb_000504_070 Hb_000175_540--Hb_000504_070 Hb_004453_050 Hb_004453_050 Hb_000175_540--Hb_004453_050 Hb_028227_070 Hb_028227_070 Hb_000175_540--Hb_028227_070 Hb_109002_020 Hb_109002_020 Hb_000175_540--Hb_109002_020 Hb_000023_280 Hb_000023_280 Hb_000175_540--Hb_000023_280 Hb_000312_080 Hb_000312_080 Hb_001215_040--Hb_000312_080 Hb_001215_040--Hb_000023_280 Hb_011344_120 Hb_011344_120 Hb_001215_040--Hb_011344_120 Hb_001653_020 Hb_001653_020 Hb_001215_040--Hb_001653_020 Hb_005365_030 Hb_005365_030 Hb_001215_040--Hb_005365_030 Hb_000504_070--Hb_028227_070 Hb_007416_120 Hb_007416_120 Hb_000504_070--Hb_007416_120 Hb_002534_120 Hb_002534_120 Hb_000504_070--Hb_002534_120 Hb_006452_100 Hb_006452_100 Hb_000504_070--Hb_006452_100 Hb_005914_170 Hb_005914_170 Hb_000504_070--Hb_005914_170 Hb_001633_210 Hb_001633_210 Hb_004453_050--Hb_001633_210 Hb_007416_320 Hb_007416_320 Hb_004453_050--Hb_007416_320 Hb_000120_470 Hb_000120_470 Hb_004453_050--Hb_000120_470 Hb_000614_250 Hb_000614_250 Hb_004453_050--Hb_000614_250 Hb_008173_110 Hb_008173_110 Hb_004453_050--Hb_008173_110 Hb_001545_170 Hb_001545_170 Hb_004453_050--Hb_001545_170 Hb_002481_080 Hb_002481_080 Hb_028227_070--Hb_002481_080 Hb_001016_120 Hb_001016_120 Hb_028227_070--Hb_001016_120 Hb_010964_040 Hb_010964_040 Hb_028227_070--Hb_010964_040 Hb_001584_120 Hb_001584_120 Hb_028227_070--Hb_001584_120 Hb_155159_020 Hb_155159_020 Hb_028227_070--Hb_155159_020 Hb_109002_020--Hb_000504_070 Hb_004064_010 Hb_004064_010 Hb_109002_020--Hb_004064_010 Hb_000103_270 Hb_000103_270 Hb_109002_020--Hb_000103_270 Hb_000621_020 Hb_000621_020 Hb_109002_020--Hb_000621_020 Hb_003266_100 Hb_003266_100 Hb_109002_020--Hb_003266_100 Hb_010142_030 Hb_010142_030 Hb_000023_280--Hb_010142_030 Hb_003761_010 Hb_003761_010 Hb_000023_280--Hb_003761_010 Hb_004143_040 Hb_004143_040 Hb_000023_280--Hb_004143_040 Hb_000645_090 Hb_000645_090 Hb_000023_280--Hb_000645_090 Hb_000116_410 Hb_000116_410 Hb_000023_280--Hb_000116_410
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.24491 12.7994 5.61564 15.3102 6.49588 14.9237
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.8105 24.6468 15.2261 20.9375 6.3024

CAGE analysis