Hb_000175_600

Information

Type -
Description -
Location Contig175: 414599-415481
Sequence    

Annotation

kegg
ID pop:POPTR_0003s05990g
description POPTRDRAFT_712480; hypothetical protein
nr
ID XP_012073229.1
description PREDICTED: TATA-binding protein-associated factor 2N isoform X2 [Jatropha curcas]
swissprot
ID Q5R580
description Zinc finger Ran-binding domain-containing protein 2 OS=Pongo abelii GN=ZRANB2 PE=2 SV=1
trembl
ID A0A067KQ49
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06179 PE=4 SV=1
Gene Ontology
ID GO:0008270
description zinc finger family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16745: 414201-415722
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000175_600 0.0 - - PREDICTED: TATA-binding protein-associated factor 2N isoform X2 [Jatropha curcas]
2 Hb_004102_180 0.0523474568 - - zinc finger family protein [Populus trichocarpa]
3 Hb_002326_090 0.0600365091 - - amino acid transporter, putative [Ricinus communis]
4 Hb_007292_060 0.0694948519 - - PREDICTED: uncharacterized protein LOC105632853 [Jatropha curcas]
5 Hb_136944_010 0.0753721274 - - hypothetical protein JCGZ_02762 [Jatropha curcas]
6 Hb_011218_010 0.0791043021 - - PREDICTED: putative indole-3-acetic acid-amido synthetase GH3.9 [Jatropha curcas]
7 Hb_000964_120 0.0851488956 - - DNA-damage-inducible protein f, putative [Ricinus communis]
8 Hb_069384_010 0.0883240674 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA27-like isoform X1 [Jatropha curcas]
9 Hb_003464_100 0.0915052324 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g68400 [Jatropha curcas]
10 Hb_090210_010 0.0989745287 - - neutral alpha-glucosidase ab precursor, putative [Ricinus communis]
11 Hb_006603_010 0.0990576051 - - neutral alpha-glucosidase ab precursor, putative [Ricinus communis]
12 Hb_010608_040 0.0991214265 - - PREDICTED: aluminum-activated malate transporter 9-like [Jatropha curcas]
13 Hb_003197_050 0.1051634896 - - hypothetical protein JCGZ_04279 [Jatropha curcas]
14 Hb_007290_010 0.1063615618 - - cytochrome P450, putative [Ricinus communis]
15 Hb_017061_010 0.1105408419 - - PREDICTED: protein STRICTOSIDINE SYNTHASE-LIKE 5-like [Jatropha curcas]
16 Hb_001006_300 0.1134205729 - - lipid binding protein, putative [Ricinus communis]
17 Hb_001898_030 0.1137987821 - - protein kinase-coding resistance protein [Nicotiana repanda]
18 Hb_116349_080 0.1144654245 - - Nectarin-1 precursor, putative [Ricinus communis]
19 Hb_007292_020 0.1172776602 - - Indole-3-acetic acid-amido synthetase GH3.6, putative [Ricinus communis]
20 Hb_000152_630 0.117622906 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 7 [Jatropha curcas]

Gene co-expression network

sample Hb_000175_600 Hb_000175_600 Hb_004102_180 Hb_004102_180 Hb_000175_600--Hb_004102_180 Hb_002326_090 Hb_002326_090 Hb_000175_600--Hb_002326_090 Hb_007292_060 Hb_007292_060 Hb_000175_600--Hb_007292_060 Hb_136944_010 Hb_136944_010 Hb_000175_600--Hb_136944_010 Hb_011218_010 Hb_011218_010 Hb_000175_600--Hb_011218_010 Hb_000964_120 Hb_000964_120 Hb_000175_600--Hb_000964_120 Hb_069384_010 Hb_069384_010 Hb_004102_180--Hb_069384_010 Hb_004102_180--Hb_011218_010 Hb_004102_180--Hb_007292_060 Hb_007290_010 Hb_007290_010 Hb_004102_180--Hb_007290_010 Hb_004102_180--Hb_002326_090 Hb_002326_090--Hb_007292_060 Hb_002326_090--Hb_000964_120 Hb_090210_010 Hb_090210_010 Hb_002326_090--Hb_090210_010 Hb_001898_030 Hb_001898_030 Hb_002326_090--Hb_001898_030 Hb_007292_060--Hb_000964_120 Hb_007292_060--Hb_090210_010 Hb_007292_060--Hb_011218_010 Hb_136944_010--Hb_007292_060 Hb_116349_080 Hb_116349_080 Hb_136944_010--Hb_116349_080 Hb_136944_010--Hb_000964_120 Hb_136944_010--Hb_004102_180 Hb_000731_180 Hb_000731_180 Hb_136944_010--Hb_000731_180 Hb_011218_010--Hb_069384_010 Hb_011218_010--Hb_000964_120 Hb_011218_010--Hb_002326_090 Hb_001006_300 Hb_001006_300 Hb_000964_120--Hb_001006_300 Hb_003197_050 Hb_003197_050 Hb_000964_120--Hb_003197_050 Hb_000964_120--Hb_090210_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.235863 2.09522 11.278 77.6867 0.230455 0.585333
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.659385 2.92549

CAGE analysis