Hb_000175_610

Information

Type transcription factor
Description TF Family: Tify
Location Contig175: 429209-441313
Sequence    

Annotation

kegg
ID rcu:RCOM_0927570
description hypothetical protein
nr
ID XP_012078633.1
description PREDICTED: protein TIFY 8 isoform X3 [Jatropha curcas]
swissprot
ID Q84MB2
description Protein TIFY 8 OS=Arabidopsis thaliana GN=TIFY8 PE=1 SV=1
trembl
ID A0A067KBC5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13218 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16746: 429301-441165 , PASA_asmbl_16747: 435560-436729
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000175_610 0.0 transcription factor TF Family: Tify PREDICTED: protein TIFY 8 isoform X3 [Jatropha curcas]
2 Hb_011004_010 0.1124786512 - - Mitochondrial carnitine/acylcarnitine carrier protein, putative [Ricinus communis]
3 Hb_000260_580 0.114224491 - - conserved hypothetical protein [Ricinus communis]
4 Hb_003371_100 0.121278127 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
5 Hb_000742_270 0.1226485996 - - PREDICTED: fatty acid 2-hydroxylase 1-like [Jatropha curcas]
6 Hb_001507_070 0.1299754946 - - conserved hypothetical protein [Ricinus communis]
7 Hb_148121_010 0.1342513922 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001741_090 0.1348752969 rubber biosynthesis Gene Name: SRPP1 RecName: Full=Small rubber particle protein; Short=SRPP; AltName: Full=22 kDa rubber particle protein; Short=22 kDa RPP; AltName: Full=27 kDa natural rubber allergen; AltName: Full=Latex allergen Hev b 3; AltName: Allergen=Hev b 3 [Hevea brasiliensis]
9 Hb_001035_040 0.1385978622 - - unnamed protein product [Coffea canephora]
10 Hb_000107_070 0.144253903 - - PREDICTED: uncharacterized protein LOC105641007 [Jatropha curcas]
11 Hb_000032_040 0.1521208592 - - PREDICTED: mitochondrial adenine nucleotide transporter ADNT1 [Jatropha curcas]
12 Hb_026428_010 0.1609791722 - - copper transport protein ATOX1 [Hevea brasiliensis]
13 Hb_075449_050 0.1617734142 - - PREDICTED: premnaspirodiene oxygenase-like [Jatropha curcas]
14 Hb_001780_070 0.1637785334 - - hypothetical protein JCGZ_08549 [Jatropha curcas]
15 Hb_005000_160 0.1648464635 - - PREDICTED: uncharacterized protein LOC105637882 [Jatropha curcas]
16 Hb_000920_150 0.1666950961 - - annexin [Manihot esculenta]
17 Hb_002000_110 0.1677219321 - - ASR-like protein 2 [Hevea brasiliensis]
18 Hb_000235_010 0.1696333252 - - PREDICTED: serine carboxypeptidase-like 18 [Jatropha curcas]
19 Hb_048937_030 0.1702933495 - - hypothetical protein RCOM_0231790 [Ricinus communis]
20 Hb_000575_020 0.1732066998 - - PREDICTED: copper-transporting ATPase PAA1, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000175_610 Hb_000175_610 Hb_011004_010 Hb_011004_010 Hb_000175_610--Hb_011004_010 Hb_000260_580 Hb_000260_580 Hb_000175_610--Hb_000260_580 Hb_003371_100 Hb_003371_100 Hb_000175_610--Hb_003371_100 Hb_000742_270 Hb_000742_270 Hb_000175_610--Hb_000742_270 Hb_001507_070 Hb_001507_070 Hb_000175_610--Hb_001507_070 Hb_148121_010 Hb_148121_010 Hb_000175_610--Hb_148121_010 Hb_000032_040 Hb_000032_040 Hb_011004_010--Hb_000032_040 Hb_011004_010--Hb_001507_070 Hb_000575_020 Hb_000575_020 Hb_011004_010--Hb_000575_020 Hb_011004_010--Hb_000742_270 Hb_011004_010--Hb_003371_100 Hb_000260_580--Hb_003371_100 Hb_029243_040 Hb_029243_040 Hb_000260_580--Hb_029243_040 Hb_000260_580--Hb_001507_070 Hb_000260_580--Hb_000742_270 Hb_000260_580--Hb_011004_010 Hb_003371_100--Hb_001507_070 Hb_005000_160 Hb_005000_160 Hb_003371_100--Hb_005000_160 Hb_003371_100--Hb_000742_270 Hb_000742_270--Hb_001507_070 Hb_000742_270--Hb_148121_010 Hb_000742_270--Hb_000032_040 Hb_001268_080 Hb_001268_080 Hb_000742_270--Hb_001268_080 Hb_024714_060 Hb_024714_060 Hb_000742_270--Hb_024714_060 Hb_001507_070--Hb_148121_010 Hb_000215_180 Hb_000215_180 Hb_001507_070--Hb_000215_180 Hb_001507_070--Hb_000032_040 Hb_001741_090 Hb_001741_090 Hb_148121_010--Hb_001741_090 Hb_001035_040 Hb_001035_040 Hb_148121_010--Hb_001035_040 Hb_148121_010--Hb_001268_080 Hb_148121_010--Hb_000032_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
87.796 19.9702 11.3057 23.7131 15.9158 26.7651
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
373.798 147.132 203.025 22.0849 6.12712

CAGE analysis