Hb_000175_630

Information

Type -
Description -
Location Contig175: 472399-477499
Sequence    

Annotation

kegg
ID rcu:RCOM_0804620
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012078629.1
description PREDICTED: pentatricopeptide repeat-containing protein At5g11310, mitochondrial [Jatropha curcas]
swissprot
ID Q9LFM6
description Pentatricopeptide repeat-containing protein At5g11310, mitochondrial OS=Arabidopsis thaliana GN=At5g11310 PE=2 SV=1
trembl
ID A0A067K7U6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13216 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16748: 473100-475497 , PASA_asmbl_16749: 473099-475457 , PASA_asmbl_16751: 476230-477011
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000175_630 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At5g11310, mitochondrial [Jatropha curcas]
2 Hb_001427_210 0.093978529 - - PREDICTED: uncharacterized protein LOC105637797 isoform X1 [Jatropha curcas]
3 Hb_000041_300 0.0940014904 transcription factor TF Family: SNF2 PREDICTED: uncharacterized ATP-dependent helicase C23E6.02 isoform X2 [Jatropha curcas]
4 Hb_000264_180 0.1069005093 - - PREDICTED: uncharacterized protein LOC100777318 [Glycine max]
5 Hb_000334_170 0.1090674612 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP42 isoform X1 [Jatropha curcas]
6 Hb_003470_070 0.1159865667 - - rubisco subunit binding-protein beta subunit, rubb, putative [Ricinus communis]
7 Hb_012262_040 0.1168003025 - - PREDICTED: uncharacterized protein LOC105633697 [Jatropha curcas]
8 Hb_004631_150 0.1177923639 - - PREDICTED: bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic [Jatropha curcas]
9 Hb_001040_070 0.1204285482 - - PREDICTED: uncharacterized protein LOC105649523 [Jatropha curcas]
10 Hb_000188_050 0.1216983725 - - PREDICTED: uridine nucleosidase 1 [Jatropha curcas]
11 Hb_139002_010 0.1271647911 - - alpha-(1,4)-fucosyltransferase, putative [Ricinus communis]
12 Hb_000562_070 0.1275736864 - - PREDICTED: uncharacterized protein LOC105635371 isoform X1 [Jatropha curcas]
13 Hb_000136_030 0.1279763919 - - serine/arginine rich splicing factor, putative [Ricinus communis]
14 Hb_001153_050 0.128121646 - - PREDICTED: protein FIZZY-RELATED 2 [Jatropha curcas]
15 Hb_004324_330 0.1289480672 - - PREDICTED: uncharacterized protein LOC105648374 [Jatropha curcas]
16 Hb_031042_060 0.1307182764 - - PREDICTED: asparagine--tRNA ligase, chloroplastic/mitochondrial [Jatropha curcas]
17 Hb_022250_100 0.1318112414 - - calnexin, putative [Ricinus communis]
18 Hb_006911_070 0.1328248916 - - 50S ribosomal protein L1p, putative [Ricinus communis]
19 Hb_000589_190 0.1329994849 - - PREDICTED: actin-related protein 5 isoform X1 [Jatropha curcas]
20 Hb_000302_190 0.1335275276 - - PREDICTED: uncharacterized protein At3g49140-like [Jatropha curcas]

Gene co-expression network

sample Hb_000175_630 Hb_000175_630 Hb_001427_210 Hb_001427_210 Hb_000175_630--Hb_001427_210 Hb_000041_300 Hb_000041_300 Hb_000175_630--Hb_000041_300 Hb_000264_180 Hb_000264_180 Hb_000175_630--Hb_000264_180 Hb_000334_170 Hb_000334_170 Hb_000175_630--Hb_000334_170 Hb_003470_070 Hb_003470_070 Hb_000175_630--Hb_003470_070 Hb_012262_040 Hb_012262_040 Hb_000175_630--Hb_012262_040 Hb_001427_210--Hb_003470_070 Hb_001427_210--Hb_012262_040 Hb_000562_070 Hb_000562_070 Hb_001427_210--Hb_000562_070 Hb_000098_240 Hb_000098_240 Hb_001427_210--Hb_000098_240 Hb_020141_040 Hb_020141_040 Hb_001427_210--Hb_020141_040 Hb_022250_100 Hb_022250_100 Hb_000041_300--Hb_022250_100 Hb_004225_040 Hb_004225_040 Hb_000041_300--Hb_004225_040 Hb_000041_300--Hb_000334_170 Hb_026053_040 Hb_026053_040 Hb_000041_300--Hb_026053_040 Hb_000261_050 Hb_000261_050 Hb_000041_300--Hb_000261_050 Hb_001040_070 Hb_001040_070 Hb_000264_180--Hb_001040_070 Hb_006573_160 Hb_006573_160 Hb_000264_180--Hb_006573_160 Hb_003026_030 Hb_003026_030 Hb_000264_180--Hb_003026_030 Hb_044155_010 Hb_044155_010 Hb_000264_180--Hb_044155_010 Hb_000264_180--Hb_001427_210 Hb_000260_560 Hb_000260_560 Hb_000334_170--Hb_000260_560 Hb_000334_170--Hb_001040_070 Hb_001232_100 Hb_001232_100 Hb_000334_170--Hb_001232_100 Hb_000264_230 Hb_000264_230 Hb_000334_170--Hb_000264_230 Hb_003470_070--Hb_000562_070 Hb_005181_040 Hb_005181_040 Hb_003470_070--Hb_005181_040 Hb_003470_070--Hb_001040_070 Hb_001411_030 Hb_001411_030 Hb_003470_070--Hb_001411_030 Hb_001277_340 Hb_001277_340 Hb_003470_070--Hb_001277_340 Hb_002045_170 Hb_002045_170 Hb_012262_040--Hb_002045_170 Hb_000862_100 Hb_000862_100 Hb_012262_040--Hb_000862_100 Hb_000359_190 Hb_000359_190 Hb_012262_040--Hb_000359_190 Hb_001153_050 Hb_001153_050 Hb_012262_040--Hb_001153_050 Hb_002311_190 Hb_002311_190 Hb_012262_040--Hb_002311_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.8737 3.50763 7.88722 4.54076 7.55672 3.07025
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.49828 1.42723 1.4699 2.06348 7.21802

CAGE analysis