Hb_000175_650

Information

Type -
Description -
Location Contig175: 494603-496408
Sequence    

Annotation

kegg
ID rcu:RCOM_0804600
description cyclin A, putative
nr
ID XP_012078626.1
description PREDICTED: cyclin-A2-2-like [Jatropha curcas]
swissprot
ID Q9C968
description Cyclin-A2-4 OS=Arabidopsis thaliana GN=CYCA2-4 PE=2 SV=1
trembl
ID A0A067KKF4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13214 PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000175_650 0.0 - - PREDICTED: cyclin-A2-2-like [Jatropha curcas]
2 Hb_000834_110 0.1122870608 - - uncharacterized protein LOC100501873 [Zea mays]
3 Hb_000571_130 0.1385939428 - - kinase, putative [Ricinus communis]
4 Hb_020287_010 0.1728759408 - - conserved hypothetical protein [Ricinus communis]
5 Hb_016529_010 0.1768681309 - - polyprotein [Oryza australiensis]
6 Hb_002471_010 0.2236701432 transcription factor TF Family: PHD hypothetical protein JCGZ_04821 [Jatropha curcas]
7 Hb_000877_010 0.2565462185 - - PREDICTED: F-box protein At3g07870-like [Jatropha curcas]
8 Hb_001068_060 0.2566382096 - - PREDICTED: uncharacterized protein LOC105641067 [Jatropha curcas]
9 Hb_000032_120 0.2566490134 - - Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase [Glycine soja]
10 Hb_099335_020 0.2567216971 - - hypothetical protein ARALYDRAFT_905869 [Arabidopsis lyrata subsp. lyrata]
11 Hb_003598_060 0.2570739618 - - hypothetical protein POPTR_0006s25370g [Populus trichocarpa]
12 Hb_002056_040 0.2579303776 - - arsenical pump-driving atpase, putative [Ricinus communis]
13 Hb_000140_020 0.2579796114 - - BnaA02g09930D [Brassica napus]
14 Hb_099335_030 0.258181872 - - hypothetical protein M569_10107, partial [Genlisea aurea]
15 Hb_000175_640 0.2582589131 - - PREDICTED: photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Jatropha curcas]
16 Hb_003020_320 0.2598041729 - - -
17 Hb_124540_010 0.260280441 - - PREDICTED: protein NRT1/ PTR FAMILY 3.1-like [Populus euphratica]
18 Hb_010904_020 0.2606794017 - - PREDICTED: probable receptor-like protein kinase At5g39030 [Populus euphratica]
19 Hb_001543_010 0.2618079332 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000189_610 0.2620453984 - - Late embryogenesis abundant protein D-34, putative [Ricinus communis]

Gene co-expression network

sample Hb_000175_650 Hb_000175_650 Hb_000834_110 Hb_000834_110 Hb_000175_650--Hb_000834_110 Hb_000571_130 Hb_000571_130 Hb_000175_650--Hb_000571_130 Hb_020287_010 Hb_020287_010 Hb_000175_650--Hb_020287_010 Hb_016529_010 Hb_016529_010 Hb_000175_650--Hb_016529_010 Hb_002471_010 Hb_002471_010 Hb_000175_650--Hb_002471_010 Hb_000877_010 Hb_000877_010 Hb_000175_650--Hb_000877_010 Hb_000834_110--Hb_020287_010 Hb_000834_110--Hb_002471_010 Hb_000834_110--Hb_016529_010 Hb_000834_110--Hb_000571_130 Hb_061466_010 Hb_061466_010 Hb_000834_110--Hb_061466_010 Hb_000571_130--Hb_016529_010 Hb_000733_250 Hb_000733_250 Hb_000571_130--Hb_000733_250 Hb_000039_140 Hb_000039_140 Hb_000571_130--Hb_000039_140 Hb_007317_040 Hb_007317_040 Hb_000571_130--Hb_007317_040 Hb_000185_110 Hb_000185_110 Hb_000571_130--Hb_000185_110 Hb_020287_010--Hb_002471_010 Hb_007676_090 Hb_007676_090 Hb_020287_010--Hb_007676_090 Hb_003428_020 Hb_003428_020 Hb_020287_010--Hb_003428_020 Hb_000037_210 Hb_000037_210 Hb_020287_010--Hb_000037_210 Hb_016529_010--Hb_000733_250 Hb_002320_030 Hb_002320_030 Hb_016529_010--Hb_002320_030 Hb_000636_010 Hb_000636_010 Hb_016529_010--Hb_000636_010 Hb_099509_010 Hb_099509_010 Hb_002471_010--Hb_099509_010 Hb_009083_060 Hb_009083_060 Hb_002471_010--Hb_009083_060 Hb_002471_010--Hb_000037_210 Hb_002471_010--Hb_003428_020 Hb_000103_170 Hb_000103_170 Hb_002471_010--Hb_000103_170 Hb_001068_060 Hb_001068_060 Hb_000877_010--Hb_001068_060 Hb_000032_120 Hb_000032_120 Hb_000877_010--Hb_000032_120 Hb_099335_020 Hb_099335_020 Hb_000877_010--Hb_099335_020 Hb_003598_060 Hb_003598_060 Hb_000877_010--Hb_003598_060 Hb_002056_040 Hb_002056_040 Hb_000877_010--Hb_002056_040 Hb_000140_020 Hb_000140_020 Hb_000877_010--Hb_000140_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.23632 0 0.0689234 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.244191

CAGE analysis