Hb_000176_060

Information

Type -
Description -
Location Contig176: 114231-115948
Sequence    

Annotation

kegg
ID vvi:104877289
description uncharacterized LOC104877289
nr
ID CBI36591.3
description unnamed protein product [Vitis vinifera]
swissprot
ID -
description -
trembl
ID F6HYM9
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0037g00940 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16859: 114269-115009
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000176_060 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_022452_010 0.1508550514 - - -
3 Hb_000205_070 0.1638980782 - - kinase, putative [Ricinus communis]
4 Hb_001276_010 0.1663569077 desease resistance Gene Name: NB-ARC unnamed protein product [Vitis vinifera]
5 Hb_004631_160 0.1880449583 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-6-like [Jatropha curcas]
6 Hb_002326_060 0.1884590236 - - PREDICTED: pollen-specific leucine-rich repeat extensin-like protein 3 [Populus euphratica]
7 Hb_134732_010 0.194622526 - - -
8 Hb_003398_010 0.200826591 - - PREDICTED: uncharacterized protein At4g02000-like [Eucalyptus grandis]
9 Hb_009189_030 0.209861338 - - hypothetical protein PRUPE_ppa023969mg, partial [Prunus persica]
10 Hb_000101_210 0.2104249284 - - PREDICTED: uncharacterized protein LOC105646445 [Jatropha curcas]
11 Hb_003816_020 0.2116170397 - - hypothetical protein POPTR_0017s05940g [Populus trichocarpa]
12 Hb_012150_070 0.213288304 - - hypothetical protein JCGZ_04984 [Jatropha curcas]
13 Hb_000018_160 0.2147784197 - - nitrate transporter, putative [Ricinus communis]
14 Hb_001935_190 0.2151612616 - - Nuc-1 negative regulatory protein preg, putative [Ricinus communis]
15 Hb_000317_090 0.2177035001 - - hypothetical protein RCOM_1176360 [Ricinus communis]
16 Hb_005568_070 0.219704332 - - PREDICTED: protein NRT1/ PTR FAMILY 2.6-like [Gossypium raimondii]
17 Hb_114868_010 0.2207294532 - - -
18 Hb_027255_010 0.2218987631 transcription factor TF Family: Orphans conserved hypothetical protein [Ricinus communis]
19 Hb_000211_080 0.2225657154 - - PREDICTED: probable isoleucine--tRNA ligase, cytoplasmic [Jatropha curcas]
20 Hb_002217_130 0.2262103499 - - galactinol synthase-1 [Manihot esculenta]

Gene co-expression network

sample Hb_000176_060 Hb_000176_060 Hb_022452_010 Hb_022452_010 Hb_000176_060--Hb_022452_010 Hb_000205_070 Hb_000205_070 Hb_000176_060--Hb_000205_070 Hb_001276_010 Hb_001276_010 Hb_000176_060--Hb_001276_010 Hb_004631_160 Hb_004631_160 Hb_000176_060--Hb_004631_160 Hb_002326_060 Hb_002326_060 Hb_000176_060--Hb_002326_060 Hb_134732_010 Hb_134732_010 Hb_000176_060--Hb_134732_010 Hb_022452_010--Hb_001276_010 Hb_171659_010 Hb_171659_010 Hb_022452_010--Hb_171659_010 Hb_003816_020 Hb_003816_020 Hb_022452_010--Hb_003816_020 Hb_022452_010--Hb_000205_070 Hb_001951_120 Hb_001951_120 Hb_022452_010--Hb_001951_120 Hb_027255_010 Hb_027255_010 Hb_000205_070--Hb_027255_010 Hb_003337_070 Hb_003337_070 Hb_000205_070--Hb_003337_070 Hb_009189_030 Hb_009189_030 Hb_000205_070--Hb_009189_030 Hb_006745_020 Hb_006745_020 Hb_000205_070--Hb_006745_020 Hb_000317_090 Hb_000317_090 Hb_001276_010--Hb_000317_090 Hb_001276_010--Hb_171659_010 Hb_003772_080 Hb_003772_080 Hb_001276_010--Hb_003772_080 Hb_003222_010 Hb_003222_010 Hb_001276_010--Hb_003222_010 Hb_008616_030 Hb_008616_030 Hb_004631_160--Hb_008616_030 Hb_003398_010 Hb_003398_010 Hb_004631_160--Hb_003398_010 Hb_000617_040 Hb_000617_040 Hb_004631_160--Hb_000617_040 Hb_007044_010 Hb_007044_010 Hb_004631_160--Hb_007044_010 Hb_011639_010 Hb_011639_010 Hb_004631_160--Hb_011639_010 Hb_004631_160--Hb_000205_070 Hb_001159_210 Hb_001159_210 Hb_002326_060--Hb_001159_210 Hb_002326_060--Hb_134732_010 Hb_000001_160 Hb_000001_160 Hb_002326_060--Hb_000001_160 Hb_001935_190 Hb_001935_190 Hb_002326_060--Hb_001935_190 Hb_000038_150 Hb_000038_150 Hb_002326_060--Hb_000038_150 Hb_134732_010--Hb_000038_150 Hb_005116_020 Hb_005116_020 Hb_134732_010--Hb_005116_020 Hb_134732_010--Hb_001159_210 Hb_003320_030 Hb_003320_030 Hb_134732_010--Hb_003320_030 Hb_156144_020 Hb_156144_020 Hb_134732_010--Hb_156144_020 Hb_000200_060 Hb_000200_060 Hb_134732_010--Hb_000200_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
156.654 72.327 1.37842 4.33812 238.114 215.493
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.93094 1.88455 0.408768 4.90787 0.15173

CAGE analysis