Hb_000176_080

Information

Type -
Description -
Location Contig176: 256378-260395
Sequence    

Annotation

kegg
ID pop:POPTR_0006s19320g
description POPTRDRAFT_762968; leucine-rich repeat family protein
nr
ID XP_012071584.1
description PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g30520 [Jatropha curcas]
swissprot
ID Q0WVM4
description Probable LRR receptor-like serine/threonine-protein kinase At2g23950 OS=Arabidopsis thaliana GN=At2g23950 PE=2 SV=1
trembl
ID A0A067KRL7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04090 PE=3 SV=1
Gene Ontology
ID GO:0004672
description probable lrr receptor-like serine threonine-protein kinase at4g30520

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16860: 256410-258859 , PASA_asmbl_16861: 259503-260349
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000176_080 0.0 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g30520 [Jatropha curcas]
2 Hb_003623_040 0.0958881093 - - PREDICTED: xylosyltransferase 1-like [Jatropha curcas]
3 Hb_005183_130 0.1093751984 - - glycogenin, putative [Ricinus communis]
4 Hb_000108_180 0.1214384515 - - PREDICTED: uncharacterized protein LOC105630021 [Jatropha curcas]
5 Hb_025645_020 0.1249346829 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Jatropha curcas]
6 Hb_000030_130 0.1269673157 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
7 Hb_000251_120 0.1303398418 - - O-acetyltransferase, putative [Ricinus communis]
8 Hb_001001_070 0.1320691797 - - PREDICTED: uncharacterized protein LOC105633663 [Jatropha curcas]
9 Hb_030565_050 0.1367556323 - - UDP-D-GLUCURONATE 4-EPIMERASE 6 family protein [Populus trichocarpa]
10 Hb_003554_040 0.1429664215 - - -
11 Hb_001214_040 0.1568934097 - - PREDICTED: protein trichome birefringence-like 3 [Jatropha curcas]
12 Hb_150486_010 0.1570924246 - - hypothetical protein CICLE_v100116733mg, partial [Citrus clementina]
13 Hb_001789_100 0.1578314727 - - conserved hypothetical protein [Ricinus communis]
14 Hb_003177_040 0.1612182488 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
15 Hb_000236_230 0.161647982 - - PREDICTED: E3 ubiquitin-protein ligase At4g11680 isoform X2 [Jatropha curcas]
16 Hb_174541_030 0.1639034785 - - Cytochrome P450, family 98, subfamily A, polypeptide 3 [Theobroma cacao]
17 Hb_001541_060 0.1647505844 - - conserved hypothetical protein [Ricinus communis]
18 Hb_003086_030 0.1661366752 - - PREDICTED: fasciclin-like arabinogalactan protein 17 [Jatropha curcas]
19 Hb_000094_170 0.1713112964 - - PREDICTED: uncharacterized protein LOC105633781 [Jatropha curcas]
20 Hb_019516_060 0.1715222978 - - PREDICTED: uncharacterized protein LOC105634259 [Jatropha curcas]

Gene co-expression network

sample Hb_000176_080 Hb_000176_080 Hb_003623_040 Hb_003623_040 Hb_000176_080--Hb_003623_040 Hb_005183_130 Hb_005183_130 Hb_000176_080--Hb_005183_130 Hb_000108_180 Hb_000108_180 Hb_000176_080--Hb_000108_180 Hb_025645_020 Hb_025645_020 Hb_000176_080--Hb_025645_020 Hb_000030_130 Hb_000030_130 Hb_000176_080--Hb_000030_130 Hb_000251_120 Hb_000251_120 Hb_000176_080--Hb_000251_120 Hb_003623_040--Hb_005183_130 Hb_003623_040--Hb_025645_020 Hb_030565_050 Hb_030565_050 Hb_003623_040--Hb_030565_050 Hb_003554_040 Hb_003554_040 Hb_003623_040--Hb_003554_040 Hb_003623_040--Hb_000108_180 Hb_004586_440 Hb_004586_440 Hb_005183_130--Hb_004586_440 Hb_000482_080 Hb_000482_080 Hb_005183_130--Hb_000482_080 Hb_000020_140 Hb_000020_140 Hb_005183_130--Hb_000020_140 Hb_001001_070 Hb_001001_070 Hb_005183_130--Hb_001001_070 Hb_000449_070 Hb_000449_070 Hb_005183_130--Hb_000449_070 Hb_003177_040 Hb_003177_040 Hb_000108_180--Hb_003177_040 Hb_000108_180--Hb_000251_120 Hb_000108_180--Hb_001001_070 Hb_001541_060 Hb_001541_060 Hb_000108_180--Hb_001541_060 Hb_000108_180--Hb_005183_130 Hb_025645_020--Hb_003177_040 Hb_025645_020--Hb_000108_180 Hb_150486_010 Hb_150486_010 Hb_025645_020--Hb_150486_010 Hb_001789_100 Hb_001789_100 Hb_025645_020--Hb_001789_100 Hb_019516_060 Hb_019516_060 Hb_000030_130--Hb_019516_060 Hb_174541_030 Hb_174541_030 Hb_000030_130--Hb_174541_030 Hb_003086_030 Hb_003086_030 Hb_000030_130--Hb_003086_030 Hb_000246_130 Hb_000246_130 Hb_000030_130--Hb_000246_130 Hb_000928_200 Hb_000928_200 Hb_000030_130--Hb_000928_200 Hb_030565_100 Hb_030565_100 Hb_000030_130--Hb_030565_100 Hb_000251_120--Hb_001001_070 Hb_000392_540 Hb_000392_540 Hb_000251_120--Hb_000392_540 Hb_000251_120--Hb_003177_040 Hb_008461_060 Hb_008461_060 Hb_000251_120--Hb_008461_060 Hb_001195_380 Hb_001195_380 Hb_000251_120--Hb_001195_380
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.74141 4.83132 3.648 42.6004 1.60571 1.97418
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.19843 0.574649 0.22446 1.60386 20.8644

CAGE analysis