Hb_000176_100

Information

Type -
Description -
Location Contig176: 318652-324425
Sequence    

Annotation

kegg
ID sly:101250651
description probable splicing factor 3A subunit 1
nr
ID XP_004232619.1
description PREDICTED: probable splicing factor 3A subunit 1 [Solanum lycopersicum]
swissprot
ID O13900
description Pre-mRNA-splicing factor sap114 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sap114 PE=1 SV=1
trembl
ID K4BA66
description Uncharacterized protein OS=Solanum lycopersicum GN=Solyc02g081960.2 PE=4 SV=1
Gene Ontology
ID GO:0003723
description probable splicing factor 3a subunit 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16862: 318707-320584 , PASA_asmbl_16863: 319170-320133 , PASA_asmbl_16866: 321351-324197 , PASA_asmbl_16867: 322105-324189
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000176_100 0.0 - - PREDICTED: probable splicing factor 3A subunit 1 [Solanum lycopersicum]
2 Hb_000949_010 0.0520468248 - - PREDICTED: regulator of nonsense transcripts UPF2 [Jatropha curcas]
3 Hb_001959_020 0.0523902819 - - PREDICTED: uncharacterized protein LOC105638454 isoform X1 [Jatropha curcas]
4 Hb_003581_170 0.054004024 - - PREDICTED: alpha-amylase 3, chloroplastic [Jatropha curcas]
5 Hb_005357_260 0.0542458753 - - PREDICTED: polyadenylation and cleavage factor homolog 4 [Jatropha curcas]
6 Hb_000703_130 0.0550186169 - - PREDICTED: ATP-dependent RNA helicase DHX36 [Jatropha curcas]
7 Hb_011689_030 0.056682363 - - 80 kD MCM3-associated protein, putative [Ricinus communis]
8 Hb_000665_230 0.058653647 - - PREDICTED: uncharacterized protein LOC105637615 [Jatropha curcas]
9 Hb_023226_080 0.0595637915 transcription factor TF Family: C3H PREDICTED: 30-kDa cleavage and polyadenylation specificity factor 30 isoform X1 [Jatropha curcas]
10 Hb_000025_710 0.0618062793 transcription factor TF Family: SNF2 Chromodomain-helicase-DNA-binding 2 [Gossypium arboreum]
11 Hb_005542_140 0.0624354369 - - PREDICTED: U-box domain-containing protein 62-like [Jatropha curcas]
12 Hb_000099_040 0.0630421809 - - unnamed protein product [Coffea canephora]
13 Hb_001673_050 0.0651319599 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 8-like isoform X1 [Jatropha curcas]
14 Hb_007426_060 0.0656613291 desease resistance Gene Name: NB-ARC unnamed protein product [Coffea canephora]
15 Hb_000069_470 0.0671741019 - - PREDICTED: uncharacterized protein LOC105642863 isoform X1 [Jatropha curcas]
16 Hb_003284_030 0.0674665828 transcription factor TF Family: Orphans PREDICTED: paired amphipathic helix protein Sin3-like 2 isoform X1 [Jatropha curcas]
17 Hb_159558_010 0.0675159573 - - PREDICTED: uncharacterized protein LOC105635846 [Jatropha curcas]
18 Hb_001235_230 0.0689442612 - - PREDICTED: protein transport protein SEC16B homolog [Jatropha curcas]
19 Hb_000025_320 0.0692595156 - - PREDICTED: pentatricopeptide repeat-containing protein At4g28010 [Jatropha curcas]
20 Hb_007818_030 0.0693113278 - - PREDICTED: transcriptional corepressor SEUSS-like [Jatropha curcas]

Gene co-expression network

sample Hb_000176_100 Hb_000176_100 Hb_000949_010 Hb_000949_010 Hb_000176_100--Hb_000949_010 Hb_001959_020 Hb_001959_020 Hb_000176_100--Hb_001959_020 Hb_003581_170 Hb_003581_170 Hb_000176_100--Hb_003581_170 Hb_005357_260 Hb_005357_260 Hb_000176_100--Hb_005357_260 Hb_000703_130 Hb_000703_130 Hb_000176_100--Hb_000703_130 Hb_011689_030 Hb_011689_030 Hb_000176_100--Hb_011689_030 Hb_003284_030 Hb_003284_030 Hb_000949_010--Hb_003284_030 Hb_011947_050 Hb_011947_050 Hb_000949_010--Hb_011947_050 Hb_000949_010--Hb_003581_170 Hb_000949_010--Hb_001959_020 Hb_174865_020 Hb_174865_020 Hb_000949_010--Hb_174865_020 Hb_001959_020--Hb_003581_170 Hb_000661_200 Hb_000661_200 Hb_001959_020--Hb_000661_200 Hb_000069_410 Hb_000069_410 Hb_001959_020--Hb_000069_410 Hb_128743_010 Hb_128743_010 Hb_001959_020--Hb_128743_010 Hb_000105_040 Hb_000105_040 Hb_003581_170--Hb_000105_040 Hb_001699_280 Hb_001699_280 Hb_003581_170--Hb_001699_280 Hb_011242_060 Hb_011242_060 Hb_003581_170--Hb_011242_060 Hb_000836_020 Hb_000836_020 Hb_003581_170--Hb_000836_020 Hb_005357_260--Hb_011689_030 Hb_005402_040 Hb_005402_040 Hb_005357_260--Hb_005402_040 Hb_011202_020 Hb_011202_020 Hb_005357_260--Hb_011202_020 Hb_000665_230 Hb_000665_230 Hb_005357_260--Hb_000665_230 Hb_003124_160 Hb_003124_160 Hb_005357_260--Hb_003124_160 Hb_000265_090 Hb_000265_090 Hb_000703_130--Hb_000265_090 Hb_007818_030 Hb_007818_030 Hb_000703_130--Hb_007818_030 Hb_009476_090 Hb_009476_090 Hb_000703_130--Hb_009476_090 Hb_000579_010 Hb_000579_010 Hb_000703_130--Hb_000579_010 Hb_002687_090 Hb_002687_090 Hb_000703_130--Hb_002687_090 Hb_011689_030--Hb_000665_230 Hb_001133_030 Hb_001133_030 Hb_011689_030--Hb_001133_030 Hb_009486_170 Hb_009486_170 Hb_011689_030--Hb_009486_170 Hb_000958_050 Hb_000958_050 Hb_011689_030--Hb_000958_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.8419 45.7919 18.311 19.1089 31.0918 24.5281
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.5843 12.5919 16.6109 26.8035 27.8179

CAGE analysis