Hb_000176_110

Information

Type -
Description -
Location Contig176: 337678-340328
Sequence    

Annotation

kegg
ID rcu:RCOM_1564380
description seryl-tRNA synthetase, putative (EC:6.1.1.11)
nr
ID XP_012078468.1
description PREDICTED: serine--tRNA ligase [Jatropha curcas]
swissprot
ID O81983
description Serine--tRNA ligase OS=Helianthus annuus PE=2 SV=1
trembl
ID A0A067K8Q1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13161 PE=3 SV=1
Gene Ontology
ID GO:0005737
description serine--trna ligase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16868: 337052-360858 , PASA_asmbl_16869: 337038-360842
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000176_110 0.0 - - PREDICTED: serine--tRNA ligase [Jatropha curcas]
2 Hb_003352_050 0.0601866906 - - PREDICTED: uncharacterized protein LOC105643709 [Jatropha curcas]
3 Hb_003453_020 0.0632208875 - - PREDICTED: histidine biosynthesis bifunctional protein hisIE, chloroplastic [Jatropha curcas]
4 Hb_000012_090 0.0765839879 - - 3'-5' exonuclease, putative [Ricinus communis]
5 Hb_000003_090 0.0773239026 - - -
6 Hb_006922_080 0.0779218454 - - PREDICTED: E3 ubiquitin-protein ligase SINAT3-like [Glycine max]
7 Hb_000077_050 0.0803055096 - - PREDICTED: elongation factor G-1, mitochondrial isoform X1 [Jatropha curcas]
8 Hb_025557_020 0.0807008967 - - PREDICTED: activating signal cointegrator 1 [Jatropha curcas]
9 Hb_000258_410 0.0824102471 - - PREDICTED: uncharacterized protein LOC105630409 [Jatropha curcas]
10 Hb_004096_170 0.0839421941 - - PREDICTED: uncharacterized protein DDB_G0275933 [Jatropha curcas]
11 Hb_000209_090 0.0839603986 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
12 Hb_006637_060 0.0856253971 - - PREDICTED: uncharacterized protein LOC105649300 [Jatropha curcas]
13 Hb_003384_030 0.0859033425 - - PREDICTED: eukaryotic translation initiation factor 2 subunit beta-like [Jatropha curcas]
14 Hb_000322_050 0.0877547957 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 4-like [Jatropha curcas]
15 Hb_001741_140 0.0880286096 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
16 Hb_033642_020 0.0896798278 - - hypothetical protein JCGZ_19094 [Jatropha curcas]
17 Hb_000956_030 0.0913551239 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 19-like [Jatropha curcas]
18 Hb_007441_340 0.0917449904 - - protein with unknown function [Ricinus communis]
19 Hb_003434_060 0.0919487442 - - PREDICTED: membrane-bound transcription factor site-2 protease homolog isoform X1 [Jatropha curcas]
20 Hb_012305_070 0.0919665732 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000176_110 Hb_000176_110 Hb_003352_050 Hb_003352_050 Hb_000176_110--Hb_003352_050 Hb_003453_020 Hb_003453_020 Hb_000176_110--Hb_003453_020 Hb_000012_090 Hb_000012_090 Hb_000176_110--Hb_000012_090 Hb_000003_090 Hb_000003_090 Hb_000176_110--Hb_000003_090 Hb_006922_080 Hb_006922_080 Hb_000176_110--Hb_006922_080 Hb_000077_050 Hb_000077_050 Hb_000176_110--Hb_000077_050 Hb_002377_040 Hb_002377_040 Hb_003352_050--Hb_002377_040 Hb_005754_020 Hb_005754_020 Hb_003352_050--Hb_005754_020 Hb_002044_090 Hb_002044_090 Hb_003352_050--Hb_002044_090 Hb_000684_180 Hb_000684_180 Hb_003352_050--Hb_000684_180 Hb_000062_230 Hb_000062_230 Hb_003352_050--Hb_000062_230 Hb_000322_050 Hb_000322_050 Hb_003453_020--Hb_000322_050 Hb_004096_170 Hb_004096_170 Hb_003453_020--Hb_004096_170 Hb_005527_050 Hb_005527_050 Hb_003453_020--Hb_005527_050 Hb_003453_020--Hb_000012_090 Hb_012305_070 Hb_012305_070 Hb_003453_020--Hb_012305_070 Hb_028639_060 Hb_028639_060 Hb_000012_090--Hb_028639_060 Hb_000012_090--Hb_006922_080 Hb_003728_020 Hb_003728_020 Hb_000012_090--Hb_003728_020 Hb_002014_080 Hb_002014_080 Hb_000012_090--Hb_002014_080 Hb_003602_040 Hb_003602_040 Hb_000012_090--Hb_003602_040 Hb_001741_140 Hb_001741_140 Hb_000003_090--Hb_001741_140 Hb_006637_060 Hb_006637_060 Hb_000003_090--Hb_006637_060 Hb_003544_090 Hb_003544_090 Hb_000003_090--Hb_003544_090 Hb_010128_130 Hb_010128_130 Hb_000003_090--Hb_010128_130 Hb_001221_230 Hb_001221_230 Hb_000003_090--Hb_001221_230 Hb_006922_080--Hb_003453_020 Hb_000116_170 Hb_000116_170 Hb_006922_080--Hb_000116_170 Hb_009118_010 Hb_009118_010 Hb_006922_080--Hb_009118_010 Hb_003656_130 Hb_003656_130 Hb_006922_080--Hb_003656_130 Hb_014568_030 Hb_014568_030 Hb_000077_050--Hb_014568_030 Hb_001584_110 Hb_001584_110 Hb_000077_050--Hb_001584_110 Hb_003434_060 Hb_003434_060 Hb_000077_050--Hb_003434_060 Hb_000390_060 Hb_000390_060 Hb_000077_050--Hb_000390_060 Hb_000230_330 Hb_000230_330 Hb_000077_050--Hb_000230_330 Hb_000462_150 Hb_000462_150 Hb_000077_050--Hb_000462_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
230.379 43.7617 40.7948 52.5248 246.523 278.649
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
175.395 113.928 81.5841 60.051 35.3698

CAGE analysis