Hb_000176_120

Information

Type -
Description -
Location Contig176: 357354-360695
Sequence    

Annotation

kegg
ID rcu:RCOM_0867180
description seryl-tRNA synthetase, putative (EC:6.1.1.11)
nr
ID XP_002519913.1
description seryl-tRNA synthetase, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S1P8
description Seryl-tRNA synthetase, putative OS=Ricinus communis GN=RCOM_0867180 PE=4 SV=1
Gene Ontology
ID GO:0005737
description serine--trna ligase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16868: 337052-360858 , PASA_asmbl_16869: 337038-360842
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000176_120 0.0 - - seryl-tRNA synthetase, putative [Ricinus communis]
2 Hb_005054_070 0.1007801323 - - unnamed protein product [Vitis vinifera]
3 Hb_006487_060 0.1167314003 - - Defective in cullin neddylation protein, putative [Ricinus communis]
4 Hb_152554_010 0.1200928618 - - hypothetical protein B456_008G095800, partial [Gossypium raimondii]
5 Hb_000001_040 0.1243800615 - - unnamed protein product [Coffea canephora]
6 Hb_010504_030 0.125479071 - - calmodulin homolog {EST} [Brassica napus, Naehan, root, Peptide Partial, 53 aa]
7 Hb_136731_010 0.1270786965 - - PREDICTED: uncharacterized protein LOC105628378 isoform X4 [Jatropha curcas]
8 Hb_001377_180 0.1350012576 - - PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 1 [Jatropha curcas]
9 Hb_005367_010 0.1360482284 - - -
10 Hb_000261_360 0.137405561 - - unknown [Lotus japonicus]
11 Hb_006252_010 0.1404333826 - - PREDICTED: alpha-ketoglutarate-dependent dioxygenase alkB homolog 6 isoform X1 [Jatropha curcas]
12 Hb_116596_010 0.1405188066 - - PREDICTED: probable receptor-like protein kinase At5g47070-like isoform X1 [Citrus sinensis]
13 Hb_000265_130 0.1418965396 - - -
14 Hb_128998_010 0.1421169553 - - PREDICTED: uncharacterized protein LOC105650916 [Jatropha curcas]
15 Hb_005714_130 0.142856655 transcription factor TF Family: C2H2 unknown [Populus trichocarpa x Populus deltoides]
16 Hb_005085_030 0.1506342418 - - PREDICTED: N-acetyltransferase 9-like protein isoform X1 [Jatropha curcas]
17 Hb_002687_080 0.1507640213 - - hypothetical protein JCGZ_06535 [Jatropha curcas]
18 Hb_006663_090 0.1515934664 - - hypothetical protein B456_010G1255001, partial [Gossypium raimondii]
19 Hb_012305_040 0.15187845 - - PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 9A-like [Jatropha curcas]
20 Hb_007188_020 0.1522310744 - - hypothetical protein PRUPE_ppb010436mg [Prunus persica]

Gene co-expression network

sample Hb_000176_120 Hb_000176_120 Hb_005054_070 Hb_005054_070 Hb_000176_120--Hb_005054_070 Hb_006487_060 Hb_006487_060 Hb_000176_120--Hb_006487_060 Hb_152554_010 Hb_152554_010 Hb_000176_120--Hb_152554_010 Hb_000001_040 Hb_000001_040 Hb_000176_120--Hb_000001_040 Hb_010504_030 Hb_010504_030 Hb_000176_120--Hb_010504_030 Hb_136731_010 Hb_136731_010 Hb_000176_120--Hb_136731_010 Hb_005054_070--Hb_136731_010 Hb_032496_030 Hb_032496_030 Hb_005054_070--Hb_032496_030 Hb_005054_070--Hb_000001_040 Hb_004241_040 Hb_004241_040 Hb_005054_070--Hb_004241_040 Hb_144898_010 Hb_144898_010 Hb_005054_070--Hb_144898_010 Hb_006487_060--Hb_152554_010 Hb_007763_060 Hb_007763_060 Hb_006487_060--Hb_007763_060 Hb_006663_090 Hb_006663_090 Hb_006487_060--Hb_006663_090 Hb_006487_050 Hb_006487_050 Hb_006487_060--Hb_006487_050 Hb_000825_030 Hb_000825_030 Hb_006487_060--Hb_000825_030 Hb_007188_020 Hb_007188_020 Hb_152554_010--Hb_007188_020 Hb_000812_040 Hb_000812_040 Hb_152554_010--Hb_000812_040 Hb_003861_040 Hb_003861_040 Hb_152554_010--Hb_003861_040 Hb_001377_180 Hb_001377_180 Hb_152554_010--Hb_001377_180 Hb_000265_130 Hb_000265_130 Hb_000001_040--Hb_000265_130 Hb_106005_010 Hb_106005_010 Hb_000001_040--Hb_106005_010 Hb_000001_040--Hb_007188_020 Hb_004117_180 Hb_004117_180 Hb_000001_040--Hb_004117_180 Hb_003581_010 Hb_003581_010 Hb_000001_040--Hb_003581_010 Hb_128998_010 Hb_128998_010 Hb_010504_030--Hb_128998_010 Hb_000327_290 Hb_000327_290 Hb_010504_030--Hb_000327_290 Hb_010504_030--Hb_000001_040 Hb_010504_030--Hb_000265_130 Hb_000007_460 Hb_000007_460 Hb_010504_030--Hb_000007_460 Hb_136731_010--Hb_001377_180 Hb_000155_180 Hb_000155_180 Hb_136731_010--Hb_000155_180 Hb_136731_010--Hb_000812_040 Hb_006502_080 Hb_006502_080 Hb_136731_010--Hb_006502_080 Hb_005367_010 Hb_005367_010 Hb_136731_010--Hb_005367_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
202.04 38.0633 59.7577 357.846 212.207 893.177
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
271.622 202.088 82.1698 116.35 32.1946

CAGE analysis