Hb_000176_140

Information

Type -
Description -
Location Contig176: 370771-385261
Sequence    

Annotation

kegg
ID pop:POPTR_0001s40440g
description hypothetical protein
nr
ID XP_012068531.1
description PREDICTED: bystin [Jatropha curcas]
swissprot
ID Q13895
description Bystin OS=Homo sapiens GN=BYSL PE=1 SV=3
trembl
ID A0A067KXW6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03798 PE=4 SV=1
Gene Ontology
ID GO:0006364
description isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16873: 370846-385050 , PASA_asmbl_16874: 370895-372098 , PASA_asmbl_16876: 374035-374366 , PASA_asmbl_16877: 381818-382051
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000176_140 0.0 - - PREDICTED: bystin [Jatropha curcas]
2 Hb_127979_010 0.0569957527 - - PREDICTED: uncharacterized protein LOC105629383 [Jatropha curcas]
3 Hb_000179_250 0.0579021607 - - PREDICTED: WD repeat-containing protein 61-like [Citrus sinensis]
4 Hb_001776_080 0.0588364487 - - PREDICTED: CAX-interacting protein 4 [Jatropha curcas]
5 Hb_002044_090 0.0661520093 - - PREDICTED: uncharacterized protein LOC105643541 isoform X1 [Jatropha curcas]
6 Hb_011316_030 0.0720196397 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 7 isoform X1 [Jatropha curcas]
7 Hb_002681_140 0.0735003057 - - PREDICTED: surfeit locus protein 2 [Jatropha curcas]
8 Hb_001433_170 0.0744528897 - - PREDICTED: topless-related protein 3 isoform X1 [Jatropha curcas]
9 Hb_005754_020 0.0745387882 - - PREDICTED: mitogen-activated protein kinase homolog NTF4 [Jatropha curcas]
10 Hb_002377_050 0.0764318177 - - Agmatine deiminase, putative [Ricinus communis]
11 Hb_026048_090 0.0808551048 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002169_010 0.0818610595 - - PREDICTED: la-related protein 6B [Jatropha curcas]
13 Hb_000085_340 0.0851446981 - - PREDICTED: uncharacterized protein LOC105633038 isoform X1 [Jatropha curcas]
14 Hb_003352_050 0.0857584118 - - PREDICTED: uncharacterized protein LOC105643709 [Jatropha curcas]
15 Hb_160818_010 0.0859273955 - - -
16 Hb_000320_440 0.0861318393 - - PREDICTED: tRNA wybutosine-synthesizing protein 2/3/4 isoform X1 [Jatropha curcas]
17 Hb_002391_110 0.0877775353 - - PREDICTED: ribosomal L1 domain-containing protein 1-like [Jatropha curcas]
18 Hb_011496_010 0.0886114802 - - PREDICTED: pentatricopeptide repeat-containing protein At2g38420, mitochondrial [Jatropha curcas]
19 Hb_011609_190 0.0907617926 - - 14-3-3 protein 2 [Hevea brasiliensis]
20 Hb_003777_220 0.0910033956 transcription factor TF Family: SET PREDICTED: protein SET DOMAIN GROUP 41 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000176_140 Hb_000176_140 Hb_127979_010 Hb_127979_010 Hb_000176_140--Hb_127979_010 Hb_000179_250 Hb_000179_250 Hb_000176_140--Hb_000179_250 Hb_001776_080 Hb_001776_080 Hb_000176_140--Hb_001776_080 Hb_002044_090 Hb_002044_090 Hb_000176_140--Hb_002044_090 Hb_011316_030 Hb_011316_030 Hb_000176_140--Hb_011316_030 Hb_002681_140 Hb_002681_140 Hb_000176_140--Hb_002681_140 Hb_001433_170 Hb_001433_170 Hb_127979_010--Hb_001433_170 Hb_000057_060 Hb_000057_060 Hb_127979_010--Hb_000057_060 Hb_002391_110 Hb_002391_110 Hb_127979_010--Hb_002391_110 Hb_026048_090 Hb_026048_090 Hb_127979_010--Hb_026048_090 Hb_003404_030 Hb_003404_030 Hb_127979_010--Hb_003404_030 Hb_000179_250--Hb_001433_170 Hb_000179_250--Hb_002044_090 Hb_000179_250--Hb_011316_030 Hb_011609_190 Hb_011609_190 Hb_000179_250--Hb_011609_190 Hb_000179_250--Hb_001776_080 Hb_000320_440 Hb_000320_440 Hb_001776_080--Hb_000320_440 Hb_160818_010 Hb_160818_010 Hb_001776_080--Hb_160818_010 Hb_002149_040 Hb_002149_040 Hb_001776_080--Hb_002149_040 Hb_001776_080--Hb_011316_030 Hb_000062_230 Hb_000062_230 Hb_002044_090--Hb_000062_230 Hb_005754_020 Hb_005754_020 Hb_002044_090--Hb_005754_020 Hb_002377_040 Hb_002377_040 Hb_002044_090--Hb_002377_040 Hb_003352_050 Hb_003352_050 Hb_002044_090--Hb_003352_050 Hb_003777_220 Hb_003777_220 Hb_011316_030--Hb_003777_220 Hb_000491_080 Hb_000491_080 Hb_011316_030--Hb_000491_080 Hb_011316_030--Hb_127979_010 Hb_002681_140--Hb_002391_110 Hb_000284_200 Hb_000284_200 Hb_002681_140--Hb_000284_200 Hb_002681_140--Hb_002044_090 Hb_002681_140--Hb_127979_010 Hb_011496_010 Hb_011496_010 Hb_002681_140--Hb_011496_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
351.003 63.5907 18.0605 25.7818 310.494 347.433
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
228.428 129.708 159.694 57.877 12.9808

CAGE analysis