Hb_000178_120

Information

Type -
Description -
Location Contig178: 250160-250579
Sequence    

Annotation

kegg
ID tcc:TCM_021991
description Histone superfamily protein
nr
ID XP_012074887.1
description PREDICTED: histone H2B [Jatropha curcas]
swissprot
ID Q1S9I9
description Probable histone H2B.1 OS=Medicago truncatula PE=3 SV=3
trembl
ID A0A067KHI4
description Histone H2B OS=Jatropha curcas GN=JCGZ_09030 PE=3 SV=1
Gene Ontology
ID GO:0000786
description histone h2b-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17100: 250041-250660
cDNA
(Sanger)
(ID:Location)		 008_F10.ab1: 250126-250660 , 021_E01.ab1: 250063-250660 , 024_L01.ab1: 250063-250660 , 047_K02.ab1: 250041-250660

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000178_120 0.0 - - PREDICTED: histone H2B [Jatropha curcas]
2 Hb_023344_050 0.1203622479 - - PREDICTED: uncharacterized protein LOC105644474 [Jatropha curcas]
3 Hb_007441_260 0.1209956233 - - PREDICTED: ATP synthase subunit delta', mitochondrial-like [Jatropha curcas]
4 Hb_002774_050 0.1233523297 - - PREDICTED: uncharacterized protein LOC105630601 [Jatropha curcas]
5 Hb_010402_050 0.130444027 - - -
6 Hb_002042_080 0.1349739921 rubber biosynthesis Gene Name: Mevalonate kinase mevalonate kinase [Hevea brasiliensis]
7 Hb_002243_060 0.1409752165 - - hypothetical protein POPTR_0022s00750g [Populus trichocarpa]
8 Hb_000928_130 0.1412683954 - - PREDICTED: protein BOLA4, chloroplastic/mitochondrial [Jatropha curcas]
9 Hb_005278_040 0.1423326399 - - PREDICTED: sorcin-like isoform X1 [Populus euphratica]
10 Hb_050806_010 0.1438613184 - - PREDICTED: ubiquitin-conjugating enzyme E2-17 kDa [Jatropha curcas]
11 Hb_025645_030 0.1438620521 - - -
12 Hb_000445_490 0.1464838811 - - -
13 Hb_004724_380 0.1467003588 - - PREDICTED: cold-inducible RNA-binding protein B-like [Jatropha curcas]
14 Hb_000975_230 0.1473409763 - - hypothetical protein ZEAMMB73_864543 [Zea mays]
15 Hb_147752_010 0.1481116466 - - PREDICTED: 40S ribosomal protein S9-2-like isoform X1 [Populus euphratica]
16 Hb_001348_120 0.1496771729 - - Phloem protein 2-B10, putative [Theobroma cacao]
17 Hb_001172_100 0.1508380714 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3-like isoform X1 [Jatropha curcas]
18 Hb_000384_120 0.1510018789 transcription factor TF Family: Whirly PREDICTED: single-stranded DNA-bindig protein WHY2, mitochondrial [Jatropha curcas]
19 Hb_138585_040 0.1513242004 - - PREDICTED: proteasome subunit alpha type-4 [Jatropha curcas]
20 Hb_007192_100 0.1525621644 - - PREDICTED: protein DEHYDRATION-INDUCED 19 homolog 6-like [Jatropha curcas]

Gene co-expression network

sample Hb_000178_120 Hb_000178_120 Hb_023344_050 Hb_023344_050 Hb_000178_120--Hb_023344_050 Hb_007441_260 Hb_007441_260 Hb_000178_120--Hb_007441_260 Hb_002774_050 Hb_002774_050 Hb_000178_120--Hb_002774_050 Hb_010402_050 Hb_010402_050 Hb_000178_120--Hb_010402_050 Hb_002042_080 Hb_002042_080 Hb_000178_120--Hb_002042_080 Hb_002243_060 Hb_002243_060 Hb_000178_120--Hb_002243_060 Hb_000928_130 Hb_000928_130 Hb_023344_050--Hb_000928_130 Hb_002026_120 Hb_002026_120 Hb_023344_050--Hb_002026_120 Hb_025645_030 Hb_025645_030 Hb_023344_050--Hb_025645_030 Hb_005278_040 Hb_005278_040 Hb_023344_050--Hb_005278_040 Hb_001240_020 Hb_001240_020 Hb_023344_050--Hb_001240_020 Hb_000056_250 Hb_000056_250 Hb_023344_050--Hb_000056_250 Hb_000384_120 Hb_000384_120 Hb_007441_260--Hb_000384_120 Hb_005391_030 Hb_005391_030 Hb_007441_260--Hb_005391_030 Hb_000087_130 Hb_000087_130 Hb_007441_260--Hb_000087_130 Hb_007192_100 Hb_007192_100 Hb_007441_260--Hb_007192_100 Hb_003880_030 Hb_003880_030 Hb_007441_260--Hb_003880_030 Hb_000417_260 Hb_000417_260 Hb_007441_260--Hb_000417_260 Hb_050806_010 Hb_050806_010 Hb_002774_050--Hb_050806_010 Hb_002774_050--Hb_007192_100 Hb_001314_040 Hb_001314_040 Hb_002774_050--Hb_001314_040 Hb_001357_120 Hb_001357_120 Hb_002774_050--Hb_001357_120 Hb_002774_050--Hb_010402_050 Hb_003581_220 Hb_003581_220 Hb_010402_050--Hb_003581_220 Hb_010402_050--Hb_050806_010 Hb_152910_020 Hb_152910_020 Hb_010402_050--Hb_152910_020 Hb_001172_100 Hb_001172_100 Hb_010402_050--Hb_001172_100 Hb_032969_030 Hb_032969_030 Hb_010402_050--Hb_032969_030 Hb_000318_160 Hb_000318_160 Hb_010402_050--Hb_000318_160 Hb_001059_120 Hb_001059_120 Hb_002042_080--Hb_001059_120 Hb_147752_010 Hb_147752_010 Hb_002042_080--Hb_147752_010 Hb_002042_080--Hb_002243_060 Hb_002042_080--Hb_007441_260 Hb_002042_080--Hb_001240_020 Hb_007254_080 Hb_007254_080 Hb_002243_060--Hb_007254_080 Hb_000110_170 Hb_000110_170 Hb_002243_060--Hb_000110_170 Hb_002081_030 Hb_002081_030 Hb_002243_060--Hb_002081_030 Hb_002243_060--Hb_147752_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.4771 9.87281 14.9986 44.7523 3.78645 2.43918
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
76.1642 99.2293 63.5282 20.8021 23.9639

CAGE analysis