Hb_000179_010

Information

Type -
Description -
Location Contig179: 12273-13823
Sequence    

Annotation

kegg
ID rcu:RCOM_1064670
description cytochrome P450, putative (EC:1.14.14.1)
nr
ID XP_012072814.1
description PREDICTED: alkane hydroxylase MAH1-like [Jatropha curcas]
swissprot
ID Q9FVS9
description Alkane hydroxylase MAH1 OS=Arabidopsis thaliana GN=CYP96A15 PE=2 SV=1
trembl
ID B9S657
description Cytochrome P450, putative OS=Ricinus communis GN=RCOM_1064670 PE=3 SV=1
Gene Ontology
ID GO:0005506
description cytochrome p450 86b1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17272: 12204-13857
cDNA
(Sanger)
(ID:Location)		 030_N21.ab1: 12205-12937 , 046_F16.ab1: 12205-12909

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000179_010 0.0 - - PREDICTED: alkane hydroxylase MAH1-like [Jatropha curcas]
2 Hb_004837_010 0.0351136719 - - PREDICTED: aldehyde dehydrogenase family 3 member F1-like [Jatropha curcas]
3 Hb_000251_150 0.0444614401 - - PREDICTED: probable starch synthase 4, chloroplastic/amyloplastic isoform X2 [Jatropha curcas]
4 Hb_001307_050 0.0451197516 - - PREDICTED: protein NRT1/ PTR FAMILY 5.2-like [Jatropha curcas]
5 Hb_158001_010 0.0463633287 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1, partial [Populus euphratica]
6 Hb_000046_400 0.0495078533 - - conserved hypothetical protein [Ricinus communis]
7 Hb_029991_010 0.0546969011 - - hypothetical protein PRUPE_ppa001615mg [Prunus persica]
8 Hb_005743_050 0.0551346991 - - unnamed protein product [Coffea canephora]
9 Hb_000987_030 0.0559382251 transcription factor TF Family: BES1 hypothetical protein POPTR_0016s13350g [Populus trichocarpa]
10 Hb_006132_080 0.0601339608 - - PREDICTED: cytochrome P450 86A8-like [Jatropha curcas]
11 Hb_001295_070 0.0616749071 - - PREDICTED: putative UPF0481 protein At3g02645 [Jatropha curcas]
12 Hb_004032_400 0.0618515284 - - PREDICTED: uncharacterized transporter YBR287W-like [Jatropha curcas]
13 Hb_004452_070 0.0628803893 transcription factor TF Family: TCP transcription factor, putative [Ricinus communis]
14 Hb_002534_020 0.0633278107 - - PREDICTED: chlorophyll a-b binding protein 4, chloroplastic [Gossypium raimondii]
15 Hb_085682_010 0.0641608821 - - -
16 Hb_000497_050 0.0646552114 - - PREDICTED: photosystem II repair protein PSB27-H1, chloroplastic [Jatropha curcas]
17 Hb_029879_020 0.0650170599 - - PREDICTED: cytochrome P450 77A1 [Jatropha curcas]
18 Hb_001507_060 0.0664802553 - - translation initiation factor eif-2b gamma subunit, putative [Ricinus communis]
19 Hb_000139_170 0.0665544976 - - PREDICTED: uncharacterized protein LOC105631957 [Jatropha curcas]
20 Hb_033187_010 0.0668083076 - - epoxide hydrolase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000179_010 Hb_000179_010 Hb_004837_010 Hb_004837_010 Hb_000179_010--Hb_004837_010 Hb_000251_150 Hb_000251_150 Hb_000179_010--Hb_000251_150 Hb_001307_050 Hb_001307_050 Hb_000179_010--Hb_001307_050 Hb_158001_010 Hb_158001_010 Hb_000179_010--Hb_158001_010 Hb_000046_400 Hb_000046_400 Hb_000179_010--Hb_000046_400 Hb_029991_010 Hb_029991_010 Hb_000179_010--Hb_029991_010 Hb_004032_400 Hb_004032_400 Hb_004837_010--Hb_004032_400 Hb_004837_010--Hb_001307_050 Hb_004837_010--Hb_158001_010 Hb_085682_010 Hb_085682_010 Hb_004837_010--Hb_085682_010 Hb_146255_030 Hb_146255_030 Hb_004837_010--Hb_146255_030 Hb_000987_030 Hb_000987_030 Hb_000251_150--Hb_000987_030 Hb_000251_150--Hb_000046_400 Hb_005743_050 Hb_005743_050 Hb_000251_150--Hb_005743_050 Hb_029879_020 Hb_029879_020 Hb_000251_150--Hb_029879_020 Hb_004452_070 Hb_004452_070 Hb_000251_150--Hb_004452_070 Hb_000497_050 Hb_000497_050 Hb_001307_050--Hb_000497_050 Hb_001307_050--Hb_029991_010 Hb_001307_050--Hb_146255_030 Hb_004338_050 Hb_004338_050 Hb_001307_050--Hb_004338_050 Hb_158001_010--Hb_000987_030 Hb_158001_010--Hb_005743_050 Hb_158001_010--Hb_085682_010 Hb_001295_070 Hb_001295_070 Hb_158001_010--Hb_001295_070 Hb_001507_060 Hb_001507_060 Hb_158001_010--Hb_001507_060 Hb_000046_400--Hb_029879_020 Hb_007317_030 Hb_007317_030 Hb_000046_400--Hb_007317_030 Hb_000046_400--Hb_000987_030 Hb_000046_400--Hb_158001_010 Hb_131466_010 Hb_131466_010 Hb_029991_010--Hb_131466_010 Hb_004607_110 Hb_004607_110 Hb_029991_010--Hb_004607_110 Hb_028491_010 Hb_028491_010 Hb_029991_010--Hb_028491_010 Hb_029991_010--Hb_000497_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0546014 3.91865 3.04158 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00943337 8.12319

CAGE analysis