Hb_000179_020

Information

Type -
Description -
Location Contig179: 19888-48846
Sequence    

Annotation

kegg
ID rcu:RCOM_0566570
description amidase, putative (EC:3.5.1.4)
nr
ID XP_002530483.1
description amidase, putative [Ricinus communis]
swissprot
ID Q9MUK5
description Translocon at the outer membrane of chloroplasts 64 OS=Pisum sativum GN=TOC64 PE=1 SV=1
trembl
ID B9SWW4
description Amidase, putative OS=Ricinus communis GN=RCOM_0566570 PE=4 SV=1
Gene Ontology
ID GO:0005515
description outer envelope protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17273: 20177-43192
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000179_020 0.0 - - amidase, putative [Ricinus communis]
2 Hb_011794_060 0.0301664486 - - PREDICTED: beta-amylase 2, chloroplastic isoform X1 [Jatropha curcas]
3 Hb_002174_060 0.0628839407 - - PREDICTED: pentatricopeptide repeat-containing protein At1g09900-like [Jatropha curcas]
4 Hb_002079_010 0.0690354173 - - hypothetical protein POPTR_0001s01970g [Populus trichocarpa]
5 Hb_000889_020 0.0722703866 - - ribosome biogenesis protein brix, putative [Ricinus communis]
6 Hb_001866_110 0.0731441454 - - PREDICTED: trihelix transcription factor GT-3b-like [Jatropha curcas]
7 Hb_004195_280 0.0733018527 - - PREDICTED: CDK5RAP1-like protein [Jatropha curcas]
8 Hb_000184_110 0.0754100326 - - hypothetical protein F383_18769 [Gossypium arboreum]
9 Hb_007407_040 0.0762901776 - - ankyrin repeat-containing protein, putative [Ricinus communis]
10 Hb_002030_030 0.0771267713 - - PREDICTED: GLABRA2 expression modulator [Jatropha curcas]
11 Hb_001017_040 0.077236533 - - PREDICTED: protein GLE1 isoform X2 [Populus euphratica]
12 Hb_005977_090 0.0793799972 - - PREDICTED: F-box/kelch-repeat protein At1g16250 [Jatropha curcas]
13 Hb_003602_040 0.0815888225 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
14 Hb_004724_200 0.0822696124 - - PREDICTED: WD-40 repeat-containing protein MSI1 [Jatropha curcas]
15 Hb_005883_050 0.0837086769 - - PREDICTED: transportin-3 [Jatropha curcas]
16 Hb_000046_440 0.0862515775 transcription factor TF Family: SNF2 PREDICTED: putative chromatin-remodeling complex ATPase chain isoform X1 [Jatropha curcas]
17 Hb_003052_150 0.0873310296 - - PREDICTED: putative ATP-dependent RNA helicase DHX33 [Jatropha curcas]
18 Hb_003434_060 0.0887886926 - - PREDICTED: membrane-bound transcription factor site-2 protease homolog isoform X1 [Jatropha curcas]
19 Hb_004204_020 0.0888167358 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105640780 [Jatropha curcas]
20 Hb_000373_240 0.089168285 - - PREDICTED: uncharacterized protein LOC105640940 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000179_020 Hb_000179_020 Hb_011794_060 Hb_011794_060 Hb_000179_020--Hb_011794_060 Hb_002174_060 Hb_002174_060 Hb_000179_020--Hb_002174_060 Hb_002079_010 Hb_002079_010 Hb_000179_020--Hb_002079_010 Hb_000889_020 Hb_000889_020 Hb_000179_020--Hb_000889_020 Hb_001866_110 Hb_001866_110 Hb_000179_020--Hb_001866_110 Hb_004195_280 Hb_004195_280 Hb_000179_020--Hb_004195_280 Hb_011794_060--Hb_000889_020 Hb_003602_040 Hb_003602_040 Hb_011794_060--Hb_003602_040 Hb_011794_060--Hb_002174_060 Hb_011794_060--Hb_002079_010 Hb_001017_040 Hb_001017_040 Hb_011794_060--Hb_001017_040 Hb_002174_060--Hb_004195_280 Hb_000364_060 Hb_000364_060 Hb_002174_060--Hb_000364_060 Hb_010423_020 Hb_010423_020 Hb_002174_060--Hb_010423_020 Hb_002174_060--Hb_001866_110 Hb_000184_110 Hb_000184_110 Hb_002174_060--Hb_000184_110 Hb_000103_180 Hb_000103_180 Hb_002079_010--Hb_000103_180 Hb_002030_030 Hb_002030_030 Hb_002079_010--Hb_002030_030 Hb_007426_030 Hb_007426_030 Hb_002079_010--Hb_007426_030 Hb_006400_060 Hb_006400_060 Hb_002079_010--Hb_006400_060 Hb_063090_010 Hb_063090_010 Hb_002079_010--Hb_063090_010 Hb_000373_240 Hb_000373_240 Hb_000889_020--Hb_000373_240 Hb_000166_110 Hb_000166_110 Hb_000889_020--Hb_000166_110 Hb_007218_080 Hb_007218_080 Hb_000889_020--Hb_007218_080 Hb_006692_030 Hb_006692_030 Hb_000889_020--Hb_006692_030 Hb_000429_120 Hb_000429_120 Hb_001866_110--Hb_000429_120 Hb_005977_090 Hb_005977_090 Hb_001866_110--Hb_005977_090 Hb_003428_070 Hb_003428_070 Hb_001866_110--Hb_003428_070 Hb_001866_110--Hb_000889_020 Hb_004195_280--Hb_010423_020 Hb_009265_080 Hb_009265_080 Hb_004195_280--Hb_009265_080 Hb_171900_100 Hb_171900_100 Hb_004195_280--Hb_171900_100 Hb_003006_060 Hb_003006_060 Hb_004195_280--Hb_003006_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.7905 3.4699 3.66996 3.13596 12.8497 16.9125
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.3324 6.20228 8.78539 6.51251 5.8895

CAGE analysis