Hb_000179_030

Information

Type -
Description -
Location Contig179: 50286-52927
Sequence    

Annotation

kegg
ID rcu:RCOM_0566450
description hypothetical protein
nr
ID XP_012088559.1
description PREDICTED: zinc finger protein VAR3, chloroplastic [Jatropha curcas]
swissprot
ID Q8S9K3
description Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana GN=VAR3 PE=1 SV=2
trembl
ID A0A067JIZ0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_27101 PE=4 SV=1
Gene Ontology
ID GO:0008270
description zinc finger protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17274: 50544-52923
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000179_030 0.0 - - PREDICTED: zinc finger protein VAR3, chloroplastic [Jatropha curcas]
2 Hb_006355_010 0.0446629396 - - PREDICTED: protein NLRC3 [Jatropha curcas]
3 Hb_008159_020 0.0607041319 - - PREDICTED: guanine nucleotide-binding protein subunit beta-like protein [Jatropha curcas]
4 Hb_023386_040 0.0607742727 - - PREDICTED: chaperone protein dnaJ 13-like [Populus euphratica]
5 Hb_005914_060 0.062866533 - - PREDICTED: splicing factor U2af large subunit A [Jatropha curcas]
6 Hb_001486_340 0.0652663203 - - PREDICTED: double-stranded RNA-binding protein 1-like [Jatropha curcas]
7 Hb_000308_030 0.0660286543 - - PREDICTED: uncharacterized protein LOC105639686 [Jatropha curcas]
8 Hb_000926_190 0.0669774512 - - PREDICTED: 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic isoform X2 [Jatropha curcas]
9 Hb_001926_030 0.0677745375 - - PREDICTED: apoptosis inhibitor 5 [Jatropha curcas]
10 Hb_003609_030 0.0683691017 - - PREDICTED: autophagy-related protein 18f [Jatropha curcas]
11 Hb_002175_030 0.0690827397 - - PREDICTED: snRNA-activating protein complex subunit isoform X2 [Jatropha curcas]
12 Hb_007054_060 0.070046503 - - -
13 Hb_000334_270 0.070451638 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
14 Hb_020000_020 0.0720753855 - - Troponin C, skeletal muscle, putative [Ricinus communis]
15 Hb_000879_200 0.0723398533 - - PREDICTED: A-kinase anchor protein 17A [Jatropha curcas]
16 Hb_111198_010 0.0735025049 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 37-like isoform X1 [Jatropha curcas]
17 Hb_032202_110 0.0739935978 - - PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
18 Hb_006252_040 0.0741530579 - - queuine tRNA-ribosyltransferase, putative [Ricinus communis]
19 Hb_183612_040 0.0743158832 - - PREDICTED: uncharacterized protein LOC105632370 [Jatropha curcas]
20 Hb_000768_110 0.0744326092 - - PREDICTED: chromo domain-containing protein LHP1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000179_030 Hb_000179_030 Hb_006355_010 Hb_006355_010 Hb_000179_030--Hb_006355_010 Hb_008159_020 Hb_008159_020 Hb_000179_030--Hb_008159_020 Hb_023386_040 Hb_023386_040 Hb_000179_030--Hb_023386_040 Hb_005914_060 Hb_005914_060 Hb_000179_030--Hb_005914_060 Hb_001486_340 Hb_001486_340 Hb_000179_030--Hb_001486_340 Hb_000308_030 Hb_000308_030 Hb_000179_030--Hb_000308_030 Hb_002175_030 Hb_002175_030 Hb_006355_010--Hb_002175_030 Hb_000334_270 Hb_000334_270 Hb_006355_010--Hb_000334_270 Hb_006355_010--Hb_001486_340 Hb_000771_180 Hb_000771_180 Hb_006355_010--Hb_000771_180 Hb_005337_090 Hb_005337_090 Hb_006355_010--Hb_005337_090 Hb_004235_080 Hb_004235_080 Hb_008159_020--Hb_004235_080 Hb_000768_110 Hb_000768_110 Hb_008159_020--Hb_000768_110 Hb_006252_040 Hb_006252_040 Hb_008159_020--Hb_006252_040 Hb_002823_030 Hb_002823_030 Hb_008159_020--Hb_002823_030 Hb_008159_020--Hb_005914_060 Hb_154745_010 Hb_154745_010 Hb_023386_040--Hb_154745_010 Hb_000926_190 Hb_000926_190 Hb_023386_040--Hb_000926_190 Hb_023386_040--Hb_006252_040 Hb_023386_040--Hb_005914_060 Hb_003952_070 Hb_003952_070 Hb_023386_040--Hb_003952_070 Hb_005914_060--Hb_000926_190 Hb_142439_010 Hb_142439_010 Hb_005914_060--Hb_142439_010 Hb_005914_060--Hb_000768_110 Hb_003428_070 Hb_003428_070 Hb_005914_060--Hb_003428_070 Hb_000538_100 Hb_000538_100 Hb_001486_340--Hb_000538_100 Hb_001486_340--Hb_000308_030 Hb_000174_110 Hb_000174_110 Hb_001486_340--Hb_000174_110 Hb_006620_020 Hb_006620_020 Hb_001486_340--Hb_006620_020 Hb_000308_030--Hb_005337_090 Hb_000915_020 Hb_000915_020 Hb_000308_030--Hb_000915_020 Hb_008453_140 Hb_008453_140 Hb_000308_030--Hb_008453_140 Hb_021576_100 Hb_021576_100 Hb_000308_030--Hb_021576_100 Hb_001926_030 Hb_001926_030 Hb_000308_030--Hb_001926_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.2379 10.0434 8.15434 5.43404 10.5788 15.4056
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.45671 9.24984 6.44727 7.29481 4.93949

CAGE analysis