Hb_000179_050

Information

Type -
Description -
Location Contig179: 78465-79248
Sequence    

Annotation

kegg
ID pxb:103941232
description 40S ribosomal protein S17-4-like
nr
ID ADR71227.1
description 40S ribosomal protein S17A [Hevea brasiliensis]
swissprot
ID Q9SQZ1
description 40S ribosomal protein S17-3 OS=Arabidopsis thaliana GN=RPS17C PE=2 SV=3
trembl
ID I3NMJ0
description 40S ribosomal protein S17A OS=Hevea brasiliensis GN=RPS17A PE=2 SV=1
Gene Ontology
ID GO:0005840
description 40s ribosomal protein s17-4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17275: 76337-79269
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000179_050 0.0 - - 40S ribosomal protein S17A [Hevea brasiliensis]
2 Hb_006153_120 0.0966804655 - - hypothetical protein JCGZ_20793 [Jatropha curcas]
3 Hb_001856_020 0.1058509889 transcription factor TF Family: Orphans ethylene receptor, putative [Ricinus communis]
4 Hb_007161_010 0.1129214845 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105630404 isoform X1 [Jatropha curcas]
5 Hb_000196_090 0.1194038249 - - axonemal dynein light chain, putative [Ricinus communis]
6 Hb_002849_210 0.1218828672 - - protein binding protein, putative [Ricinus communis]
7 Hb_005147_090 0.1232891769 - - PREDICTED: KH domain-containing protein At1g09660/At1g09670 isoform X1 [Jatropha curcas]
8 Hb_000836_080 0.124539351 - - PREDICTED: pentatricopeptide repeat-containing protein At2g46050, mitochondrial [Jatropha curcas]
9 Hb_000671_150 0.1252149368 - - PREDICTED: signal recognition particle 19 kDa protein-like [Jatropha curcas]
10 Hb_000983_100 0.125229077 - - PREDICTED: AP-4 complex subunit mu isoform X1 [Vitis vinifera]
11 Hb_002609_280 0.1255323621 - - villin 1-4, putative [Ricinus communis]
12 Hb_000091_090 0.1270202034 - - hypothetical protein JCGZ_09031 [Jatropha curcas]
13 Hb_002794_030 0.128206441 - - hypothetical protein JCGZ_20185 [Jatropha curcas]
14 Hb_001123_230 0.1294108477 - - PREDICTED: uncharacterized protein LOC105647321 [Jatropha curcas]
15 Hb_000124_020 0.1294365577 - - PREDICTED: uncharacterized protein LOC105636589 [Jatropha curcas]
16 Hb_007672_010 0.1308151504 - - PREDICTED: uncharacterized protein LOC105639669 isoform X1 [Jatropha curcas]
17 Hb_000086_570 0.1319627585 - - hypothetical protein JCGZ_24934 [Jatropha curcas]
18 Hb_000156_100 0.1335318988 - - PREDICTED: uncharacterized mitochondrial protein ymf11 [Jatropha curcas]
19 Hb_002392_040 0.1352692488 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001881_020 0.1361490882 - - clathrin binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000179_050 Hb_000179_050 Hb_006153_120 Hb_006153_120 Hb_000179_050--Hb_006153_120 Hb_001856_020 Hb_001856_020 Hb_000179_050--Hb_001856_020 Hb_007161_010 Hb_007161_010 Hb_000179_050--Hb_007161_010 Hb_000196_090 Hb_000196_090 Hb_000179_050--Hb_000196_090 Hb_002849_210 Hb_002849_210 Hb_000179_050--Hb_002849_210 Hb_005147_090 Hb_005147_090 Hb_000179_050--Hb_005147_090 Hb_000671_150 Hb_000671_150 Hb_006153_120--Hb_000671_150 Hb_000086_570 Hb_000086_570 Hb_006153_120--Hb_000086_570 Hb_100506_010 Hb_100506_010 Hb_006153_120--Hb_100506_010 Hb_001881_020 Hb_001881_020 Hb_006153_120--Hb_001881_020 Hb_000089_160 Hb_000089_160 Hb_006153_120--Hb_000089_160 Hb_000193_250 Hb_000193_250 Hb_001856_020--Hb_000193_250 Hb_000056_100 Hb_000056_100 Hb_001856_020--Hb_000056_100 Hb_000124_020 Hb_000124_020 Hb_001856_020--Hb_000124_020 Hb_000157_010 Hb_000157_010 Hb_001856_020--Hb_000157_010 Hb_001123_230 Hb_001123_230 Hb_001856_020--Hb_001123_230 Hb_005614_050 Hb_005614_050 Hb_007161_010--Hb_005614_050 Hb_000363_200 Hb_000363_200 Hb_007161_010--Hb_000363_200 Hb_002078_460 Hb_002078_460 Hb_007161_010--Hb_002078_460 Hb_003551_050 Hb_003551_050 Hb_007161_010--Hb_003551_050 Hb_000753_130 Hb_000753_130 Hb_007161_010--Hb_000753_130 Hb_002794_030 Hb_002794_030 Hb_000196_090--Hb_002794_030 Hb_002540_030 Hb_002540_030 Hb_000196_090--Hb_002540_030 Hb_002609_280 Hb_002609_280 Hb_000196_090--Hb_002609_280 Hb_007672_010 Hb_007672_010 Hb_000196_090--Hb_007672_010 Hb_000261_460 Hb_000261_460 Hb_000196_090--Hb_000261_460 Hb_001329_210 Hb_001329_210 Hb_000196_090--Hb_001329_210 Hb_001518_020 Hb_001518_020 Hb_002849_210--Hb_001518_020 Hb_000809_040 Hb_000809_040 Hb_002849_210--Hb_000809_040 Hb_009026_050 Hb_009026_050 Hb_002849_210--Hb_009026_050 Hb_000339_070 Hb_000339_070 Hb_002849_210--Hb_000339_070 Hb_002849_210--Hb_000124_020 Hb_005147_090--Hb_001123_230 Hb_000457_150 Hb_000457_150 Hb_005147_090--Hb_000457_150 Hb_018790_060 Hb_018790_060 Hb_005147_090--Hb_018790_060 Hb_000297_200 Hb_000297_200 Hb_005147_090--Hb_000297_200 Hb_003750_080 Hb_003750_080 Hb_005147_090--Hb_003750_080 Hb_000200_340 Hb_000200_340 Hb_005147_090--Hb_000200_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.3266 9.78229 0.530221 6.47076 15.7421 15.6873
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.7231 27.2026 35.8179 14.0505 0.760436

CAGE analysis