Hb_000179_060

Information

Type -
Description -
Location Contig179: 82455-84367
Sequence    

Annotation

kegg
ID pop:POPTR_0010s23130g
description hypothetical protein
nr
ID XP_006378771.1
description hypothetical protein POPTR_0010s23130g, partial [Populus trichocarpa]
swissprot
ID Q6NLE0
description F-box protein At5g41720 OS=Arabidopsis thaliana GN=At5g41720 PE=2 SV=1
trembl
ID U5FZE9
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0010s23130g PE=4 SV=1
Gene Ontology
ID GO:0005515
description f-box protein at5g49610-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17276: 84899-85062
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000179_060 0.0 - - hypothetical protein POPTR_0010s23130g, partial [Populus trichocarpa]
2 Hb_000201_010 0.1199481307 - - unnamed protein product [Vitis vinifera]
3 Hb_000258_230 0.1238504915 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002043_070 0.1351039284 - - PREDICTED: jacalin-related lectin 19 [Jatropha curcas]
5 Hb_009771_040 0.1439987519 - - hypothetical protein JCGZ_25039 [Jatropha curcas]
6 Hb_002250_140 0.1449315678 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 6 isoform X1 [Populus euphratica]
7 Hb_005211_210 0.1461969086 - - lysine and histidine specific transporter family protein [Populus trichocarpa]
8 Hb_026050_010 0.1546164754 - - protein phosphatase 2c, putative [Ricinus communis]
9 Hb_002168_070 0.1549224157 - - Jasmonate O-methyltransferase, putative [Ricinus communis]
10 Hb_008689_010 0.1563693388 - - hypothetical protein POPTR_0006s25330g [Populus trichocarpa]
11 Hb_005675_070 0.157695125 - - hypothetical protein EUGRSUZ_K01585 [Eucalyptus grandis]
12 Hb_001339_030 0.1584529209 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 11-like [Jatropha curcas]
13 Hb_003050_330 0.1584738557 - - hypothetical protein JCGZ_04591 [Jatropha curcas]
14 Hb_007103_020 0.1588921904 - - hypothetical protein POPTR_0007s04191g [Populus trichocarpa]
15 Hb_010050_040 0.1604966363 - - PREDICTED: protein FANTASTIC FOUR 1 [Jatropha curcas]
16 Hb_000434_060 0.1607200242 desease resistance Gene Name: hmm Disease resistance protein RPM1, putative [Ricinus communis]
17 Hb_000369_040 0.1639074516 - - Ankyrin repeat family protein, putative [Theobroma cacao]
18 Hb_002066_010 0.1647581639 - - PREDICTED: acetylglutamate kinase, chloroplastic [Jatropha curcas]
19 Hb_002193_080 0.1662581156 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 1 [Jatropha curcas]
20 Hb_152277_010 0.1664836004 - - PREDICTED: 9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_000179_060 Hb_000179_060 Hb_000201_010 Hb_000201_010 Hb_000179_060--Hb_000201_010 Hb_000258_230 Hb_000258_230 Hb_000179_060--Hb_000258_230 Hb_002043_070 Hb_002043_070 Hb_000179_060--Hb_002043_070 Hb_009771_040 Hb_009771_040 Hb_000179_060--Hb_009771_040 Hb_002250_140 Hb_002250_140 Hb_000179_060--Hb_002250_140 Hb_005211_210 Hb_005211_210 Hb_000179_060--Hb_005211_210 Hb_000201_010--Hb_005211_210 Hb_008689_010 Hb_008689_010 Hb_000201_010--Hb_008689_010 Hb_000201_010--Hb_000258_230 Hb_002193_080 Hb_002193_080 Hb_000201_010--Hb_002193_080 Hb_000201_010--Hb_002043_070 Hb_003050_330 Hb_003050_330 Hb_000201_010--Hb_003050_330 Hb_000258_230--Hb_009771_040 Hb_000258_230--Hb_002250_140 Hb_007103_020 Hb_007103_020 Hb_000258_230--Hb_007103_020 Hb_152277_010 Hb_152277_010 Hb_000258_230--Hb_152277_010 Hb_026050_010 Hb_026050_010 Hb_000258_230--Hb_026050_010 Hb_002168_070 Hb_002168_070 Hb_002043_070--Hb_002168_070 Hb_002053_190 Hb_002053_190 Hb_002043_070--Hb_002053_190 Hb_002043_070--Hb_005211_210 Hb_002890_330 Hb_002890_330 Hb_002043_070--Hb_002890_330 Hb_000434_060 Hb_000434_060 Hb_002043_070--Hb_000434_060 Hb_002043_070--Hb_009771_040 Hb_009771_040--Hb_002168_070 Hb_009771_040--Hb_026050_010 Hb_009771_040--Hb_002250_140 Hb_009771_040--Hb_000434_060 Hb_173107_020 Hb_173107_020 Hb_009771_040--Hb_173107_020 Hb_002250_140--Hb_026050_010 Hb_002250_140--Hb_173107_020 Hb_002250_140--Hb_007103_020 Hb_002335_010 Hb_002335_010 Hb_002250_140--Hb_002335_010 Hb_005211_210--Hb_002193_080 Hb_005211_210--Hb_008689_010 Hb_005675_070 Hb_005675_070 Hb_005211_210--Hb_005675_070 Hb_005211_210--Hb_000434_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0556139 0.509141 0.248436 0.679944 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0106772 0.557244

CAGE analysis