Hb_000179_190

Information

Type transcription factor
Description TF Family: Alfin-like
Location Contig179: 186925-190005
Sequence    

Annotation

kegg
ID vvi:100852794
description PHD finger protein ALFIN-LIKE 4
nr
ID XP_003633111.1
description PREDICTED: PHD finger protein ALFIN-LIKE 4 isoform X1 [Vitis vinifera]
swissprot
ID Q5XEM9
description PHD finger protein ALFIN-LIKE 5 OS=Arabidopsis thaliana GN=AL5 PE=2 SV=1
trembl
ID D7TCI6
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0016g01500 PE=4 SV=1
Gene Ontology
ID GO:0008270
description phd finger protein alfin-like 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17286: 187453-189584 , PASA_asmbl_17287: 185637-187346 , PASA_asmbl_17288: 185793-189967
cDNA
(Sanger)
(ID:Location)		 020_F17.ab1: 185637-186511

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000179_190 0.0 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 4 isoform X1 [Vitis vinifera]
2 Hb_000110_350 0.0453304745 - - PREDICTED: ubiquitin receptor RAD23c-like isoform X2 [Gossypium raimondii]
3 Hb_017214_040 0.0531541573 - - PREDICTED: E3 ubiquitin-protein ligase COP1 isoform X1 [Jatropha curcas]
4 Hb_000445_060 0.0621943724 - - PREDICTED: uncharacterized protein LOC105638996 isoform X3 [Jatropha curcas]
5 Hb_003929_210 0.0634381053 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
6 Hb_005305_100 0.0667052629 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
7 Hb_170077_010 0.067279683 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD14 isoform X1 [Jatropha curcas]
8 Hb_008642_060 0.0677513597 - - PREDICTED: dynamin-related protein 1E isoform X2 [Jatropha curcas]
9 Hb_003918_030 0.0680086821 - - PREDICTED: oxysterol-binding protein-related protein 1C-like isoform X1 [Jatropha curcas]
10 Hb_003939_060 0.0714068422 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000358_220 0.0725178245 - - PREDICTED: SNW/SKI-interacting protein-like [Jatropha curcas]
12 Hb_000030_140 0.072857485 - - PREDICTED: general negative regulator of transcription subunit 3 isoform X1 [Jatropha curcas]
13 Hb_005403_010 0.0748675931 - - PREDICTED: exocyst complex component EXO70B1-like [Jatropha curcas]
14 Hb_000996_020 0.0750036812 - - PREDICTED: RNA-binding protein NOB1 [Jatropha curcas]
15 Hb_023344_140 0.0757529988 - - PREDICTED: WD repeat-containing protein 70 [Jatropha curcas]
16 Hb_002461_020 0.077107734 - - PREDICTED: uncharacterized protein LOC105642649 isoform X2 [Jatropha curcas]
17 Hb_000806_030 0.077419358 transcription factor TF Family: C2H2 PREDICTED: probable lysine-specific demethylase ELF6 [Jatropha curcas]
18 Hb_001699_010 0.0777692508 - - drought-inducible protein [Manihot esculenta]
19 Hb_000260_760 0.0779641597 - - PREDICTED: protein EXPORTIN 1A [Jatropha curcas]
20 Hb_002768_050 0.0792150944 - - Beta-1,3-galactosyltransferase sqv-2, putative [Ricinus communis]

Gene co-expression network

sample Hb_000179_190 Hb_000179_190 Hb_000110_350 Hb_000110_350 Hb_000179_190--Hb_000110_350 Hb_017214_040 Hb_017214_040 Hb_000179_190--Hb_017214_040 Hb_000445_060 Hb_000445_060 Hb_000179_190--Hb_000445_060 Hb_003929_210 Hb_003929_210 Hb_000179_190--Hb_003929_210 Hb_005305_100 Hb_005305_100 Hb_000179_190--Hb_005305_100 Hb_170077_010 Hb_170077_010 Hb_000179_190--Hb_170077_010 Hb_000110_350--Hb_170077_010 Hb_000110_350--Hb_003929_210 Hb_002768_050 Hb_002768_050 Hb_000110_350--Hb_002768_050 Hb_000110_350--Hb_000445_060 Hb_000996_020 Hb_000996_020 Hb_000110_350--Hb_000996_020 Hb_008387_010 Hb_008387_010 Hb_017214_040--Hb_008387_010 Hb_023226_070 Hb_023226_070 Hb_017214_040--Hb_023226_070 Hb_017214_040--Hb_000445_060 Hb_000227_270 Hb_000227_270 Hb_017214_040--Hb_000227_270 Hb_017214_040--Hb_000110_350 Hb_000445_060--Hb_000996_020 Hb_000868_120 Hb_000868_120 Hb_000445_060--Hb_000868_120 Hb_000445_060--Hb_002768_050 Hb_000661_120 Hb_000661_120 Hb_000445_060--Hb_000661_120 Hb_000373_170 Hb_000373_170 Hb_000445_060--Hb_000373_170 Hb_003939_060 Hb_003939_060 Hb_003929_210--Hb_003939_060 Hb_033312_130 Hb_033312_130 Hb_003929_210--Hb_033312_130 Hb_003929_210--Hb_000996_020 Hb_000358_220 Hb_000358_220 Hb_003929_210--Hb_000358_220 Hb_003929_210--Hb_002768_050 Hb_000956_040 Hb_000956_040 Hb_005305_100--Hb_000956_040 Hb_000300_030 Hb_000300_030 Hb_005305_100--Hb_000300_030 Hb_000172_360 Hb_000172_360 Hb_005305_100--Hb_000172_360 Hb_008165_020 Hb_008165_020 Hb_005305_100--Hb_008165_020 Hb_005305_100--Hb_000110_350 Hb_005403_010 Hb_005403_010 Hb_170077_010--Hb_005403_010 Hb_023344_140 Hb_023344_140 Hb_170077_010--Hb_023344_140 Hb_170077_010--Hb_000358_220 Hb_170077_010--Hb_000996_020 Hb_002461_020 Hb_002461_020 Hb_170077_010--Hb_002461_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.7839 13.1019 11.0911 8.70856 5.27075 5.85359
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.51053 3.74146 4.09991 5.12127 10.3579

CAGE analysis