Hb_000179_200

Information

Type -
Description -
Location Contig179: 191145-193294
Sequence    

Annotation

kegg
ID vvi:100255939
description phenylalanine ammonia-lyase-like
nr
ID CBI27856.3
description unnamed protein product [Vitis vinifera]
swissprot
ID P52777
description Phenylalanine ammonia-lyase OS=Pinus taeda GN=PAL PE=3 SV=1
trembl
ID D7TCJ8
description Phenylalanine ammonia-lyase OS=Vitis vinifera GN=VIT_11s0016g01640 PE=3 SV=1
Gene Ontology
ID GO:0016841
description phenylalanine ammonia-lyase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17289: 191262-191528
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000179_200 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_007451_050 0.1263775991 - - PREDICTED: uncharacterized protein LOC105643409 isoform X1 [Jatropha curcas]
3 Hb_000566_100 0.1265408009 - - hypothetical protein JCGZ_17993 [Jatropha curcas]
4 Hb_000742_250 0.1440062762 - - Tubulin beta-6 chain [Gossypium arboreum]
5 Hb_000365_260 0.1444470127 - - conserved hypothetical protein [Ricinus communis]
6 Hb_006649_080 0.1456282069 - - PREDICTED: uncharacterized protein LOC105640496 [Jatropha curcas]
7 Hb_028358_010 0.1456312988 - - PREDICTED: serine/threonine-protein kinase CTR1 isoform X1 [Jatropha curcas]
8 Hb_003641_050 0.1482832232 - - PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase II, chloroplastic [Jatropha curcas]
9 Hb_001268_210 0.1492358384 - - zinc finger protein, putative [Ricinus communis]
10 Hb_001085_250 0.1509900189 transcription factor TF Family: G2-like PREDICTED: myb family transcription factor APL isoform X2 [Jatropha curcas]
11 Hb_000028_610 0.1522539192 - - PREDICTED: uncharacterized protein LOC105644291 [Jatropha curcas]
12 Hb_001638_290 0.1530194243 rubber biosynthesis Gene Name: Pyruvate dehydrogenase pyruvate dehydrogenase, putative [Ricinus communis]
13 Hb_000956_130 0.1531483644 - - hypothetical protein POPTR_0002s12620g [Populus trichocarpa]
14 Hb_000649_050 0.1538135956 - - PREDICTED: microtubule-associated protein 70-2-like isoform X1 [Jatropha curcas]
15 Hb_000010_390 0.1563868737 transcription factor TF Family: C2H2 PREDICTED: lysine-specific demethylase REF6 [Jatropha curcas]
16 Hb_000072_150 0.1592284908 - - PREDICTED: SEC1 family transport protein SLY1-like [Populus euphratica]
17 Hb_004570_020 0.1592287866 - - PREDICTED: protein TIC 100 [Jatropha curcas]
18 Hb_011030_010 0.1621300574 desease resistance Gene Name: RLI ABC transporter family protein [Hevea brasiliensis]
19 Hb_000805_260 0.1625927277 - - PREDICTED: uncharacterized protein LOC105650295 isoform X1 [Jatropha curcas]
20 Hb_000797_050 0.1629954195 - - PREDICTED: uncharacterized protein LOC105645916 [Jatropha curcas]

Gene co-expression network

sample Hb_000179_200 Hb_000179_200 Hb_007451_050 Hb_007451_050 Hb_000179_200--Hb_007451_050 Hb_000566_100 Hb_000566_100 Hb_000179_200--Hb_000566_100 Hb_000742_250 Hb_000742_250 Hb_000179_200--Hb_000742_250 Hb_000365_260 Hb_000365_260 Hb_000179_200--Hb_000365_260 Hb_006649_080 Hb_006649_080 Hb_000179_200--Hb_006649_080 Hb_028358_010 Hb_028358_010 Hb_000179_200--Hb_028358_010 Hb_001377_320 Hb_001377_320 Hb_007451_050--Hb_001377_320 Hb_002024_040 Hb_002024_040 Hb_007451_050--Hb_002024_040 Hb_001085_250 Hb_001085_250 Hb_007451_050--Hb_001085_250 Hb_000679_130 Hb_000679_130 Hb_007451_050--Hb_000679_130 Hb_003641_050 Hb_003641_050 Hb_007451_050--Hb_003641_050 Hb_002681_050 Hb_002681_050 Hb_007451_050--Hb_002681_050 Hb_002249_120 Hb_002249_120 Hb_000566_100--Hb_002249_120 Hb_018954_020 Hb_018954_020 Hb_000566_100--Hb_018954_020 Hb_002681_170 Hb_002681_170 Hb_000566_100--Hb_002681_170 Hb_001050_010 Hb_001050_010 Hb_000566_100--Hb_001050_010 Hb_008556_030 Hb_008556_030 Hb_000566_100--Hb_008556_030 Hb_002559_040 Hb_002559_040 Hb_000566_100--Hb_002559_040 Hb_002400_270 Hb_002400_270 Hb_000742_250--Hb_002400_270 Hb_001846_060 Hb_001846_060 Hb_000742_250--Hb_001846_060 Hb_000742_250--Hb_006649_080 Hb_185467_010 Hb_185467_010 Hb_000742_250--Hb_185467_010 Hb_007786_010 Hb_007786_010 Hb_000742_250--Hb_007786_010 Hb_004096_020 Hb_004096_020 Hb_000742_250--Hb_004096_020 Hb_162286_020 Hb_162286_020 Hb_000365_260--Hb_162286_020 Hb_001268_210 Hb_001268_210 Hb_000365_260--Hb_001268_210 Hb_001916_120 Hb_001916_120 Hb_000365_260--Hb_001916_120 Hb_002027_220 Hb_002027_220 Hb_000365_260--Hb_002027_220 Hb_000465_120 Hb_000465_120 Hb_000365_260--Hb_000465_120 Hb_006649_080--Hb_185467_010 Hb_033834_010 Hb_033834_010 Hb_006649_080--Hb_033834_010 Hb_000359_250 Hb_000359_250 Hb_006649_080--Hb_000359_250 Hb_003878_120 Hb_003878_120 Hb_006649_080--Hb_003878_120 Hb_006649_080--Hb_004096_020 Hb_000956_130 Hb_000956_130 Hb_028358_010--Hb_000956_130 Hb_116349_160 Hb_116349_160 Hb_028358_010--Hb_116349_160 Hb_004007_160 Hb_004007_160 Hb_028358_010--Hb_004007_160 Hb_000761_020 Hb_000761_020 Hb_028358_010--Hb_000761_020 Hb_000120_240 Hb_000120_240 Hb_028358_010--Hb_000120_240 Hb_000390_170 Hb_000390_170 Hb_028358_010--Hb_000390_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.843547 0.131619 0.198528 0.189355 0.315142 0.431831
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.17795 0.0700008 0.263476 0.0930826 0.244523

CAGE analysis