Hb_000179_210

Information

Type -
Description -
Location Contig179: 194034-198141
Sequence    

Annotation

kegg
ID rcu:RCOM_1046260
description hypothetical protein
nr
ID XP_012076998.1
description PREDICTED: uncharacterized protein LOC105637927 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KNL5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07451 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17290: 193747-196903 , PASA_asmbl_17291: 196288-198105 , PASA_asmbl_17292: 197709-197849
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000179_210 0.0 - - PREDICTED: uncharacterized protein LOC105637927 [Jatropha curcas]
2 Hb_006501_040 0.0682305512 - - PREDICTED: pentatricopeptide repeat-containing protein At1g77170 [Jatropha curcas]
3 Hb_178968_110 0.0749611302 - - PREDICTED: uncharacterized protein LOC105630268 [Jatropha curcas]
4 Hb_001085_170 0.0785534135 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 2 isoform X1 [Jatropha curcas]
5 Hb_000059_220 0.0786498566 - - PREDICTED: CBL-interacting protein kinase 2 [Jatropha curcas]
6 Hb_000457_150 0.078941437 - - PREDICTED: transcription factor GTE8-like [Jatropha curcas]
7 Hb_003297_030 0.0808927291 - - PREDICTED: uncharacterized protein LOC105640530 [Jatropha curcas]
8 Hb_011918_080 0.0809226027 - - PREDICTED: probable serine/threonine protein kinase IREH1 isoform X2 [Jatropha curcas]
9 Hb_000186_240 0.082129991 - - PREDICTED: 39S ribosomal protein L4, mitochondrial [Jatropha curcas]
10 Hb_010863_080 0.0843464255 - - PREDICTED: membrane-anchored ubiquitin-fold protein 3-like [Jatropha curcas]
11 Hb_000110_160 0.0851085426 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002686_290 0.0863100584 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15010, mitochondrial [Populus euphratica]
13 Hb_000614_230 0.0894462012 - - PREDICTED: F-box protein SKIP14 [Jatropha curcas]
14 Hb_002477_160 0.089688491 - - hypothetical protein L484_013453 [Morus notabilis]
15 Hb_007558_140 0.0902678689 - - PREDICTED: phospholipid-transporting ATPase 1-like [Jatropha curcas]
16 Hb_000297_200 0.0920376517 - - PREDICTED: pentatricopeptide repeat-containing protein At2g33760-like [Vitis vinifera]
17 Hb_000836_070 0.0920578282 - - protein binding protein, putative [Ricinus communis]
18 Hb_000754_060 0.0928292139 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 69 isoform X1 [Jatropha curcas]
19 Hb_171900_080 0.0944765698 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
20 Hb_010710_040 0.0946419869 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000179_210 Hb_000179_210 Hb_006501_040 Hb_006501_040 Hb_000179_210--Hb_006501_040 Hb_178968_110 Hb_178968_110 Hb_000179_210--Hb_178968_110 Hb_001085_170 Hb_001085_170 Hb_000179_210--Hb_001085_170 Hb_000059_220 Hb_000059_220 Hb_000179_210--Hb_000059_220 Hb_000457_150 Hb_000457_150 Hb_000179_210--Hb_000457_150 Hb_003297_030 Hb_003297_030 Hb_000179_210--Hb_003297_030 Hb_006501_040--Hb_000059_220 Hb_006501_040--Hb_178968_110 Hb_003266_130 Hb_003266_130 Hb_006501_040--Hb_003266_130 Hb_000297_200 Hb_000297_200 Hb_006501_040--Hb_000297_200 Hb_006501_040--Hb_000457_150 Hb_178968_110--Hb_003266_130 Hb_005532_060 Hb_005532_060 Hb_178968_110--Hb_005532_060 Hb_178968_110--Hb_000457_150 Hb_000614_230 Hb_000614_230 Hb_178968_110--Hb_000614_230 Hb_010172_050 Hb_010172_050 Hb_178968_110--Hb_010172_050 Hb_006922_030 Hb_006922_030 Hb_001085_170--Hb_006922_030 Hb_007558_140 Hb_007558_140 Hb_001085_170--Hb_007558_140 Hb_002006_090 Hb_002006_090 Hb_001085_170--Hb_002006_090 Hb_001085_170--Hb_000614_230 Hb_011918_080 Hb_011918_080 Hb_001085_170--Hb_011918_080 Hb_000997_400 Hb_000997_400 Hb_000059_220--Hb_000997_400 Hb_000059_220--Hb_178968_110 Hb_000059_220--Hb_000614_230 Hb_000059_220--Hb_000297_200 Hb_000457_150--Hb_005532_060 Hb_000457_150--Hb_000297_200 Hb_055062_030 Hb_055062_030 Hb_000457_150--Hb_055062_030 Hb_000457_150--Hb_000997_400 Hb_000567_260 Hb_000567_260 Hb_000457_150--Hb_000567_260 Hb_010863_080 Hb_010863_080 Hb_003297_030--Hb_010863_080 Hb_003609_040 Hb_003609_040 Hb_003297_030--Hb_003609_040 Hb_001635_100 Hb_001635_100 Hb_003297_030--Hb_001635_100 Hb_098993_010 Hb_098993_010 Hb_003297_030--Hb_098993_010 Hb_000030_010 Hb_000030_010 Hb_003297_030--Hb_000030_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
58.1839 28.4296 10.0509 15.0949 61.4012 61.8425
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
44.7647 59.4248 101.794 16.97 15.6134

CAGE analysis