Hb_000179_230

Information

Type -
Description -
Location Contig179: 217404-231595
Sequence    

Annotation

kegg
ID pop:POPTR_0006s14790g
description POPTRDRAFT_561027; hypothetical protein
nr
ID XP_012076995.1
description PREDICTED: myosin-17 [Jatropha curcas]
swissprot
ID F4K5J1
description Myosin-17 OS=Arabidopsis thaliana GN=XI-K PE=1 SV=2
trembl
ID A0A067KFV5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07449 PE=4 SV=1
Gene Ontology
ID GO:0016459
description myosin-j heavy chain

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17295: 217512-218090
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000179_230 0.0 - - PREDICTED: myosin-17 [Jatropha curcas]
2 Hb_002915_070 0.0964282148 - - PREDICTED: protein TRANSPARENT TESTA GLABRA 1 [Jatropha curcas]
3 Hb_000805_230 0.1002404989 - - PREDICTED: oxysterol-binding protein-related protein 3C-like [Jatropha curcas]
4 Hb_004994_300 0.1291713724 - - synaptotagmin, putative [Ricinus communis]
5 Hb_000417_420 0.1423183898 - - PREDICTED: U-box domain-containing protein 17 [Jatropha curcas]
6 Hb_103788_010 0.1442933623 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
7 Hb_000460_060 0.1458609794 - - importin beta-1, putative [Ricinus communis]
8 Hb_000120_160 0.1494560415 - - unnamed protein product [Vitis vinifera]
9 Hb_003752_120 0.1542239636 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 isoform X1 [Jatropha curcas]
10 Hb_003605_220 0.1542729767 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 [Jatropha curcas]
11 Hb_004032_310 0.1565380149 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 14 [Jatropha curcas]
12 Hb_138585_100 0.1577813719 - - PREDICTED: uncharacterized protein LOC105648740 [Jatropha curcas]
13 Hb_002053_130 0.1584114299 - - UDP-glucose 4-epimerase, putative [Ricinus communis]
14 Hb_002876_250 0.1590807523 - - PREDICTED: receptor-like protein kinase 2 [Jatropha curcas]
15 Hb_012107_010 0.1600608983 - - hypothetical protein JCGZ_19531 [Jatropha curcas]
16 Hb_000448_060 0.1600991217 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 2 [Jatropha curcas]
17 Hb_005496_180 0.1605539136 - - PREDICTED: U-box domain-containing protein 4-like [Jatropha curcas]
18 Hb_012787_040 0.1618280777 - - PREDICTED: uncharacterized protein LOC105649794 isoform X2 [Jatropha curcas]
19 Hb_006054_030 0.164218911 - - PREDICTED: protein GPR107-like [Jatropha curcas]
20 Hb_001369_570 0.1664842549 - - hypothetical protein JCGZ_26236 [Jatropha curcas]

Gene co-expression network

sample Hb_000179_230 Hb_000179_230 Hb_002915_070 Hb_002915_070 Hb_000179_230--Hb_002915_070 Hb_000805_230 Hb_000805_230 Hb_000179_230--Hb_000805_230 Hb_004994_300 Hb_004994_300 Hb_000179_230--Hb_004994_300 Hb_000417_420 Hb_000417_420 Hb_000179_230--Hb_000417_420 Hb_103788_010 Hb_103788_010 Hb_000179_230--Hb_103788_010 Hb_000460_060 Hb_000460_060 Hb_000179_230--Hb_000460_060 Hb_002915_070--Hb_000805_230 Hb_000448_060 Hb_000448_060 Hb_002915_070--Hb_000448_060 Hb_003752_120 Hb_003752_120 Hb_002915_070--Hb_003752_120 Hb_004032_310 Hb_004032_310 Hb_002915_070--Hb_004032_310 Hb_002915_070--Hb_103788_010 Hb_000120_160 Hb_000120_160 Hb_000805_230--Hb_000120_160 Hb_000116_210 Hb_000116_210 Hb_000805_230--Hb_000116_210 Hb_000805_230--Hb_004032_310 Hb_000805_230--Hb_000448_060 Hb_003605_220 Hb_003605_220 Hb_004994_300--Hb_003605_220 Hb_007313_070 Hb_007313_070 Hb_004994_300--Hb_007313_070 Hb_000270_230 Hb_000270_230 Hb_004994_300--Hb_000270_230 Hb_172421_010 Hb_172421_010 Hb_004994_300--Hb_172421_010 Hb_004994_300--Hb_004032_310 Hb_004994_300--Hb_003752_120 Hb_012107_010 Hb_012107_010 Hb_000417_420--Hb_012107_010 Hb_002053_130 Hb_002053_130 Hb_000417_420--Hb_002053_130 Hb_001437_010 Hb_001437_010 Hb_000417_420--Hb_001437_010 Hb_028207_040 Hb_028207_040 Hb_000417_420--Hb_028207_040 Hb_001472_130 Hb_001472_130 Hb_000417_420--Hb_001472_130 Hb_003637_020 Hb_003637_020 Hb_103788_010--Hb_003637_020 Hb_103788_010--Hb_003752_120 Hb_185513_010 Hb_185513_010 Hb_103788_010--Hb_185513_010 Hb_006054_030 Hb_006054_030 Hb_103788_010--Hb_006054_030 Hb_000732_080 Hb_000732_080 Hb_103788_010--Hb_000732_080 Hb_000460_060--Hb_003605_220 Hb_002387_070 Hb_002387_070 Hb_000460_060--Hb_002387_070 Hb_044653_020 Hb_044653_020 Hb_000460_060--Hb_044653_020 Hb_001410_130 Hb_001410_130 Hb_000460_060--Hb_001410_130 Hb_000941_080 Hb_000941_080 Hb_000460_060--Hb_000941_080 Hb_000460_060--Hb_006054_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.378012 10.1547 1.2576 3.01702 0.927763 1.40637
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.662828 0.871982 1.51179 1.2022 1.95423

CAGE analysis