Hb_000179_250

Information

Type -
Description -
Location Contig179: 244785-247089
Sequence    

Annotation

kegg
ID cit:102628906
description WD repeat-containing protein 61-like
nr
ID XP_006475522.1
description PREDICTED: WD repeat-containing protein 61-like [Citrus sinensis]
swissprot
ID Q9SZQ5
description WD repeat-containing protein VIP3 OS=Arabidopsis thaliana GN=VIP3 PE=1 SV=1
trembl
ID A0A067KCD2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07447 PE=4 SV=1
Gene Ontology
ID GO:0005515
description wd repeat-containing protein 61

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17297: 244809-245186 , PASA_asmbl_17298: 245394-247033
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000179_250 0.0 - - PREDICTED: WD repeat-containing protein 61-like [Citrus sinensis]
2 Hb_000176_140 0.0579021607 - - PREDICTED: bystin [Jatropha curcas]
3 Hb_001433_170 0.068960327 - - PREDICTED: topless-related protein 3 isoform X1 [Jatropha curcas]
4 Hb_002044_090 0.0696931895 - - PREDICTED: uncharacterized protein LOC105643541 isoform X1 [Jatropha curcas]
5 Hb_011316_030 0.0756463951 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 7 isoform X1 [Jatropha curcas]
6 Hb_011609_190 0.0764398757 - - 14-3-3 protein 2 [Hevea brasiliensis]
7 Hb_001776_080 0.077597543 - - PREDICTED: CAX-interacting protein 4 [Jatropha curcas]
8 Hb_000062_230 0.0867673043 - - PREDICTED: probable thimet oligopeptidase isoform X1 [Jatropha curcas]
9 Hb_026048_090 0.0873911646 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002377_050 0.0876292631 - - Agmatine deiminase, putative [Ricinus communis]
11 Hb_127979_010 0.0885036359 - - PREDICTED: uncharacterized protein LOC105629383 [Jatropha curcas]
12 Hb_004813_010 0.0919676982 - - nucleic acid binding protein, putative [Ricinus communis]
13 Hb_005754_020 0.0924837618 - - PREDICTED: mitogen-activated protein kinase homolog NTF4 [Jatropha curcas]
14 Hb_002681_140 0.0944002001 - - PREDICTED: surfeit locus protein 2 [Jatropha curcas]
15 Hb_000117_040 0.0961707595 - - 30S ribosomal protein S6A [Hevea brasiliensis]
16 Hb_000085_340 0.0965429751 - - PREDICTED: uncharacterized protein LOC105633038 isoform X1 [Jatropha curcas]
17 Hb_012654_020 0.0986916618 - - conserved hypothetical protein [Ricinus communis]
18 Hb_003777_220 0.099262489 transcription factor TF Family: SET PREDICTED: protein SET DOMAIN GROUP 41 isoform X1 [Jatropha curcas]
19 Hb_003352_050 0.100308291 - - PREDICTED: uncharacterized protein LOC105643709 [Jatropha curcas]
20 Hb_002942_030 0.1005377263 - - hypothetical protein EUGRSUZ_K000651 [Eucalyptus grandis]

Gene co-expression network

sample Hb_000179_250 Hb_000179_250 Hb_000176_140 Hb_000176_140 Hb_000179_250--Hb_000176_140 Hb_001433_170 Hb_001433_170 Hb_000179_250--Hb_001433_170 Hb_002044_090 Hb_002044_090 Hb_000179_250--Hb_002044_090 Hb_011316_030 Hb_011316_030 Hb_000179_250--Hb_011316_030 Hb_011609_190 Hb_011609_190 Hb_000179_250--Hb_011609_190 Hb_001776_080 Hb_001776_080 Hb_000179_250--Hb_001776_080 Hb_127979_010 Hb_127979_010 Hb_000176_140--Hb_127979_010 Hb_000176_140--Hb_001776_080 Hb_000176_140--Hb_002044_090 Hb_000176_140--Hb_011316_030 Hb_002681_140 Hb_002681_140 Hb_000176_140--Hb_002681_140 Hb_000057_060 Hb_000057_060 Hb_001433_170--Hb_000057_060 Hb_001433_170--Hb_127979_010 Hb_001433_170--Hb_000176_140 Hb_026048_090 Hb_026048_090 Hb_001433_170--Hb_026048_090 Hb_001433_170--Hb_011609_190 Hb_000062_230 Hb_000062_230 Hb_002044_090--Hb_000062_230 Hb_005754_020 Hb_005754_020 Hb_002044_090--Hb_005754_020 Hb_002377_040 Hb_002377_040 Hb_002044_090--Hb_002377_040 Hb_003352_050 Hb_003352_050 Hb_002044_090--Hb_003352_050 Hb_003777_220 Hb_003777_220 Hb_011316_030--Hb_003777_220 Hb_000491_080 Hb_000491_080 Hb_011316_030--Hb_000491_080 Hb_011316_030--Hb_001776_080 Hb_011316_030--Hb_127979_010 Hb_000117_040 Hb_000117_040 Hb_011609_190--Hb_000117_040 Hb_012654_020 Hb_012654_020 Hb_011609_190--Hb_012654_020 Hb_002172_030 Hb_002172_030 Hb_011609_190--Hb_002172_030 Hb_011609_190--Hb_000491_080 Hb_000320_440 Hb_000320_440 Hb_001776_080--Hb_000320_440 Hb_160818_010 Hb_160818_010 Hb_001776_080--Hb_160818_010 Hb_002149_040 Hb_002149_040 Hb_001776_080--Hb_002149_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
70.6452 9.98409 5.81271 2.66926 69.8996 61.8554
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
52.3967 26.1909 29.9182 12.3441 1.98291

CAGE analysis