Hb_000179_270

Information

Type -
Description -
Location Contig179: 252888-255276
Sequence    

Annotation

kegg
ID rcu:RCOM_1046320
description hypothetical protein
nr
ID KDP33873.1
description hypothetical protein JCGZ_07444 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KFV1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07444 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17300: 252961-256235 , PASA_asmbl_17301: 253830-254614
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000179_270 0.0 - - hypothetical protein JCGZ_07444 [Jatropha curcas]
2 Hb_000087_070 0.0431035835 - - PREDICTED: probable arabinosyltransferase ARAD1 [Jatropha curcas]
3 Hb_002272_270 0.0747597523 - - hypothetical protein POPTR_0013s02780g [Populus trichocarpa]
4 Hb_002820_020 0.0757818181 - - hypothetical protein VITISV_005587 [Vitis vinifera]
5 Hb_001189_070 0.0780966134 - - PREDICTED: ribosome production factor 1 [Jatropha curcas]
6 Hb_002042_150 0.0781234649 - - PREDICTED: signal peptidase complex subunit 3B [Jatropha curcas]
7 Hb_001269_190 0.078356621 - - PREDICTED: Golgi SNAP receptor complex member 1-1 [Jatropha curcas]
8 Hb_002357_060 0.0792497292 - - hypothetical protein CICLE_v10006112mg [Citrus clementina]
9 Hb_000046_170 0.0798219498 - - PREDICTED: uncharacterized protein LOC105631841 isoform X1 [Jatropha curcas]
10 Hb_023001_040 0.0861801452 - - Metallopeptidase M24 family protein isoform 1 [Theobroma cacao]
11 Hb_000840_200 0.086412396 - - PREDICTED: carbamoyl-phosphate synthase small chain, chloroplastic-like [Jatropha curcas]
12 Hb_011344_120 0.0897918559 - - PREDICTED: uncharacterized protein LOC105645969 [Jatropha curcas]
13 Hb_002995_050 0.0900811361 - - PREDICTED: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1 isoform X2 [Jatropha curcas]
14 Hb_185255_010 0.0918222386 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]
15 Hb_000347_240 0.0932086601 - - PREDICTED: proteasome subunit alpha type-6 [Pyrus x bretschneideri]
16 Hb_004109_340 0.0932750683 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14-like [Jatropha curcas]
17 Hb_062537_010 0.0946134903 - - hypothetical protein JCGZ_13884 [Jatropha curcas]
18 Hb_000483_300 0.0971041246 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic [Populus euphratica]
19 Hb_000310_090 0.0971424322 - - 3-oxoacyl-[acyl-carrier-protein] synthase 3 A, chloroplastic [Jatropha curcas]
20 Hb_004108_220 0.0982253366 - - PREDICTED: mRNA-capping enzyme-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000179_270 Hb_000179_270 Hb_000087_070 Hb_000087_070 Hb_000179_270--Hb_000087_070 Hb_002272_270 Hb_002272_270 Hb_000179_270--Hb_002272_270 Hb_002820_020 Hb_002820_020 Hb_000179_270--Hb_002820_020 Hb_001189_070 Hb_001189_070 Hb_000179_270--Hb_001189_070 Hb_002042_150 Hb_002042_150 Hb_000179_270--Hb_002042_150 Hb_001269_190 Hb_001269_190 Hb_000179_270--Hb_001269_190 Hb_000087_070--Hb_002272_270 Hb_004607_090 Hb_004607_090 Hb_000087_070--Hb_004607_090 Hb_000087_070--Hb_001269_190 Hb_000840_200 Hb_000840_200 Hb_000087_070--Hb_000840_200 Hb_003878_150 Hb_003878_150 Hb_000087_070--Hb_003878_150 Hb_002272_270--Hb_000840_200 Hb_015675_040 Hb_015675_040 Hb_002272_270--Hb_015675_040 Hb_005288_130 Hb_005288_130 Hb_002272_270--Hb_005288_130 Hb_157023_020 Hb_157023_020 Hb_002272_270--Hb_157023_020 Hb_005800_030 Hb_005800_030 Hb_002820_020--Hb_005800_030 Hb_002820_020--Hb_000087_070 Hb_000347_240 Hb_000347_240 Hb_002820_020--Hb_000347_240 Hb_185255_010 Hb_185255_010 Hb_002820_020--Hb_185255_010 Hb_002820_020--Hb_001189_070 Hb_008841_020 Hb_008841_020 Hb_001189_070--Hb_008841_020 Hb_000310_090 Hb_000310_090 Hb_001189_070--Hb_000310_090 Hb_001189_070--Hb_000347_240 Hb_031862_100 Hb_031862_100 Hb_001189_070--Hb_031862_100 Hb_011344_120 Hb_011344_120 Hb_001189_070--Hb_011344_120 Hb_001314_050 Hb_001314_050 Hb_001189_070--Hb_001314_050 Hb_045003_010 Hb_045003_010 Hb_002042_150--Hb_045003_010 Hb_004109_340 Hb_004109_340 Hb_002042_150--Hb_004109_340 Hb_000384_070 Hb_000384_070 Hb_002042_150--Hb_000384_070 Hb_002042_150--Hb_011344_120 Hb_004108_220 Hb_004108_220 Hb_002042_150--Hb_004108_220 Hb_001269_190--Hb_185255_010 Hb_002995_050 Hb_002995_050 Hb_001269_190--Hb_002995_050 Hb_001489_110 Hb_001489_110 Hb_001269_190--Hb_001489_110 Hb_006683_070 Hb_006683_070 Hb_001269_190--Hb_006683_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.29275 4.94958 5.93592 13.7147 4.42902 5.42816
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.47357 11.7018 4.35695 9.43767 9.52745

CAGE analysis