Hb_000181_110

Information

Type -
Description -
Location Contig181: 78301-83460
Sequence    

Annotation

kegg
ID pxb:103932762
description uncharacterized LOC103932762
nr
ID XP_012076391.1
description PREDICTED: uncharacterized protein LOC105637521 [Jatropha curcas]
swissprot
ID Q13U36
description Ribosomal protein L11 methyltransferase OS=Burkholderia xenovorans (strain LB400) GN=prmA PE=3 SV=1
trembl
ID A0A067LM55
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15314 PE=3 SV=1
Gene Ontology
ID GO:0008276
description ribosomal protein l11 methyltransferase-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17501: 78179-83434
cDNA
(Sanger)
(ID:Location)		 006_I15.ab1: 80315-83434

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000181_110 0.0 - - PREDICTED: uncharacterized protein LOC105637521 [Jatropha curcas]
2 Hb_002600_020 0.072756902 - - unnamed protein product [Vitis vinifera]
3 Hb_002530_030 0.0756129032 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 4 [Jatropha curcas]
4 Hb_000959_210 0.0847536791 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 27 [Jatropha curcas]
5 Hb_003125_200 0.084974104 - - PREDICTED: mediator of RNA polymerase II transcription subunit 30 [Jatropha curcas]
6 Hb_004931_070 0.0881469932 - - PREDICTED: protein root UVB sensitive 2, chloroplastic [Jatropha curcas]
7 Hb_000317_240 0.0887341273 - - PREDICTED: protein DYAD [Jatropha curcas]
8 Hb_005137_050 0.0899102168 - - PREDICTED: nuclear pore complex protein NUP58 [Jatropha curcas]
9 Hb_001408_100 0.0911829775 - - pseudouridylate synthase, putative [Ricinus communis]
10 Hb_000220_040 0.0922220917 - - conserved hypothetical protein [Ricinus communis]
11 Hb_005588_030 0.0926416354 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 14 homolog [Eucalyptus grandis]
12 Hb_012389_020 0.0944953143 - - hypothetical protein POPTR_0006s05190g [Populus trichocarpa]
13 Hb_153553_030 0.0946591874 - - PREDICTED: zinc finger protein GIS2 [Jatropha curcas]
14 Hb_000096_070 0.0947406301 - - PREDICTED: ruvB-like 2 [Jatropha curcas]
15 Hb_020367_050 0.0954752126 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranylgeranyl pyrophosphate synthase, putative [Ricinus communis]
16 Hb_000275_170 0.0955820714 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-3b-like [Jatropha curcas]
17 Hb_032202_140 0.0956853894 - - PREDICTED: flap endonuclease GEN-like 1 [Jatropha curcas]
18 Hb_000009_530 0.0967995974 - - PREDICTED: uncharacterized protein LOC105639628 [Jatropha curcas]
19 Hb_120410_010 0.0978092835 - - PREDICTED: vesicle-associated membrane protein 727-like [Solanum tuberosum]
20 Hb_004032_430 0.0980721415 - - PREDICTED: uncharacterized protein LOC105635169 [Jatropha curcas]

Gene co-expression network

sample Hb_000181_110 Hb_000181_110 Hb_002600_020 Hb_002600_020 Hb_000181_110--Hb_002600_020 Hb_002530_030 Hb_002530_030 Hb_000181_110--Hb_002530_030 Hb_000959_210 Hb_000959_210 Hb_000181_110--Hb_000959_210 Hb_003125_200 Hb_003125_200 Hb_000181_110--Hb_003125_200 Hb_004931_070 Hb_004931_070 Hb_000181_110--Hb_004931_070 Hb_000317_240 Hb_000317_240 Hb_000181_110--Hb_000317_240 Hb_032202_140 Hb_032202_140 Hb_002600_020--Hb_032202_140 Hb_002600_020--Hb_002530_030 Hb_001163_050 Hb_001163_050 Hb_002600_020--Hb_001163_050 Hb_000684_380 Hb_000684_380 Hb_002600_020--Hb_000684_380 Hb_153553_030 Hb_153553_030 Hb_002600_020--Hb_153553_030 Hb_002530_030--Hb_000317_240 Hb_120410_010 Hb_120410_010 Hb_002530_030--Hb_120410_010 Hb_001305_010 Hb_001305_010 Hb_002530_030--Hb_001305_010 Hb_000016_250 Hb_000016_250 Hb_002530_030--Hb_000016_250 Hb_004310_150 Hb_004310_150 Hb_002530_030--Hb_004310_150 Hb_011995_010 Hb_011995_010 Hb_002530_030--Hb_011995_010 Hb_003935_020 Hb_003935_020 Hb_000959_210--Hb_003935_020 Hb_002652_030 Hb_002652_030 Hb_000959_210--Hb_002652_030 Hb_000959_210--Hb_120410_010 Hb_004032_430 Hb_004032_430 Hb_000959_210--Hb_004032_430 Hb_004093_090 Hb_004093_090 Hb_000959_210--Hb_004093_090 Hb_000959_210--Hb_002530_030 Hb_000465_460 Hb_000465_460 Hb_003125_200--Hb_000465_460 Hb_001758_100 Hb_001758_100 Hb_003125_200--Hb_001758_100 Hb_003125_200--Hb_004931_070 Hb_012389_020 Hb_012389_020 Hb_003125_200--Hb_012389_020 Hb_027472_040 Hb_027472_040 Hb_003125_200--Hb_027472_040 Hb_029388_020 Hb_029388_020 Hb_003125_200--Hb_029388_020 Hb_004931_070--Hb_000465_460 Hb_004931_070--Hb_012389_020 Hb_000421_070 Hb_000421_070 Hb_004931_070--Hb_000421_070 Hb_004931_070--Hb_000317_240 Hb_004931_070--Hb_002530_030 Hb_000757_060 Hb_000757_060 Hb_000317_240--Hb_000757_060 Hb_000768_090 Hb_000768_090 Hb_000317_240--Hb_000768_090 Hb_000317_240--Hb_000465_460 Hb_058999_020 Hb_058999_020 Hb_000317_240--Hb_058999_020 Hb_000504_140 Hb_000504_140 Hb_000317_240--Hb_000504_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.79704 2.92506 3.76853 1.2466 4.11189 2.84321
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.65166 4.35245 2.75362 2.61263 1.29083

CAGE analysis