Hb_000181_120

Information

Type -
Description -
Location Contig181: 84612-87437
Sequence    

Annotation

kegg
ID pop:POPTR_0001s40730g
description prenylated rab acceptor family protein
nr
ID XP_012076415.1
description PREDICTED: PRA1 family protein H isoform X1 [Jatropha curcas]
swissprot
ID Q8LFP1
description PRA1 family protein H OS=Arabidopsis thaliana GN=PRA1H PE=2 SV=1
trembl
ID A0A067LBL6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15315 PE=4 SV=1
Gene Ontology
ID GO:0006914
description pra1 family protein h-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17502: 86900-87410
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000181_120 0.0 - - PREDICTED: PRA1 family protein H isoform X1 [Jatropha curcas]
2 Hb_000261_220 0.0753974729 - - PREDICTED: TBC1 domain family member 13 [Jatropha curcas]
3 Hb_031527_020 0.0837008058 - - PREDICTED: pre-mRNA-splicing factor 38B isoform X1 [Jatropha curcas]
4 Hb_000487_420 0.0878429466 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At1g04390 [Jatropha curcas]
5 Hb_002374_280 0.09040343 - - -
6 Hb_001083_050 0.0906266963 - - PREDICTED: V-type proton ATPase subunit d2 [Jatropha curcas]
7 Hb_004055_150 0.0914650168 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000406_240 0.0915901271 - - PREDICTED: double-stranded RNA-binding protein 2-like [Jatropha curcas]
9 Hb_002686_250 0.0916140316 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 65 kDa protein isoform X1 [Jatropha curcas]
10 Hb_006960_050 0.0920534303 - - PREDICTED: PRKR-interacting protein 1 [Jatropha curcas]
11 Hb_005137_050 0.0922923189 - - PREDICTED: nuclear pore complex protein NUP58 [Jatropha curcas]
12 Hb_002025_110 0.09295583 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: SWI/SNF complex component SNF12 homolog isoform X1 [Jatropha curcas]
13 Hb_000227_250 0.093052309 transcription factor TF Family: SNF2 PREDICTED: probable ATP-dependent DNA helicase CHR12 [Jatropha curcas]
14 Hb_002675_260 0.0941469001 - - hypothetical protein JCGZ_06227 [Jatropha curcas]
15 Hb_003029_030 0.0942289062 - - PREDICTED: uncharacterized protein LOC105642632 isoform X2 [Jatropha curcas]
16 Hb_004635_050 0.0943944762 - - nucleolar phosphoprotein, putative [Ricinus communis]
17 Hb_000140_330 0.0946781641 - - PREDICTED: uncharacterized protein LOC105642909 [Jatropha curcas]
18 Hb_000032_490 0.0956170895 - - PREDICTED: uncharacterized protein At4g10930-like [Jatropha curcas]
19 Hb_005505_050 0.0957884855 - - PREDICTED: uncharacterized protein LOC105639309 isoform X2 [Jatropha curcas]
20 Hb_000771_180 0.096067665 - - polypyrimidine tract binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000181_120 Hb_000181_120 Hb_000261_220 Hb_000261_220 Hb_000181_120--Hb_000261_220 Hb_031527_020 Hb_031527_020 Hb_000181_120--Hb_031527_020 Hb_000487_420 Hb_000487_420 Hb_000181_120--Hb_000487_420 Hb_002374_280 Hb_002374_280 Hb_000181_120--Hb_002374_280 Hb_001083_050 Hb_001083_050 Hb_000181_120--Hb_001083_050 Hb_004055_150 Hb_004055_150 Hb_000181_120--Hb_004055_150 Hb_000261_220--Hb_001083_050 Hb_002025_110 Hb_002025_110 Hb_000261_220--Hb_002025_110 Hb_000457_050 Hb_000457_050 Hb_000261_220--Hb_000457_050 Hb_005489_080 Hb_005489_080 Hb_000261_220--Hb_005489_080 Hb_000261_220--Hb_031527_020 Hb_000140_080 Hb_000140_080 Hb_000261_220--Hb_000140_080 Hb_031527_020--Hb_005489_080 Hb_003785_040 Hb_003785_040 Hb_031527_020--Hb_003785_040 Hb_111198_010 Hb_111198_010 Hb_031527_020--Hb_111198_010 Hb_003609_030 Hb_003609_030 Hb_031527_020--Hb_003609_030 Hb_000732_120 Hb_000732_120 Hb_031527_020--Hb_000732_120 Hb_000336_250 Hb_000336_250 Hb_031527_020--Hb_000336_250 Hb_000640_310 Hb_000640_310 Hb_000487_420--Hb_000640_310 Hb_001799_050 Hb_001799_050 Hb_000487_420--Hb_001799_050 Hb_027760_080 Hb_027760_080 Hb_000487_420--Hb_027760_080 Hb_002045_150 Hb_002045_150 Hb_000487_420--Hb_002045_150 Hb_140049_030 Hb_140049_030 Hb_000487_420--Hb_140049_030 Hb_000160_350 Hb_000160_350 Hb_000487_420--Hb_000160_350 Hb_002374_280--Hb_000487_420 Hb_004976_020 Hb_004976_020 Hb_002374_280--Hb_004976_020 Hb_000649_070 Hb_000649_070 Hb_002374_280--Hb_000649_070 Hb_028900_010 Hb_028900_010 Hb_002374_280--Hb_028900_010 Hb_012753_170 Hb_012753_170 Hb_002374_280--Hb_012753_170 Hb_000477_030 Hb_000477_030 Hb_001083_050--Hb_000477_030 Hb_009252_100 Hb_009252_100 Hb_001083_050--Hb_009252_100 Hb_057878_010 Hb_057878_010 Hb_001083_050--Hb_057878_010 Hb_005883_010 Hb_005883_010 Hb_001083_050--Hb_005883_010 Hb_001171_070 Hb_001171_070 Hb_001083_050--Hb_001171_070 Hb_001926_030 Hb_001926_030 Hb_004055_150--Hb_001926_030 Hb_002686_250 Hb_002686_250 Hb_004055_150--Hb_002686_250 Hb_000853_230 Hb_000853_230 Hb_004055_150--Hb_000853_230 Hb_006620_020 Hb_006620_020 Hb_004055_150--Hb_006620_020 Hb_006960_050 Hb_006960_050 Hb_004055_150--Hb_006960_050 Hb_005993_050 Hb_005993_050 Hb_004055_150--Hb_005993_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.4321 10.5584 7.38063 3.51376 13.1281 6.47857
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.55797 6.7317 5.2205 4.27339 4.43255

CAGE analysis