Hb_000181_150

Information

Type -
Description -
Location Contig181: 108925-110519
Sequence    

Annotation

kegg
ID pvu:PHAVU_011G1647000
description hypothetical protein
nr
ID XP_007133256.1
description hypothetical protein PHAVU_011G1647000g, partial [Phaseolus vulgaris]
swissprot
ID -
description -
trembl
ID V7AK85
description Uncharacterized protein (Fragment) OS=Phaseolus vulgaris GN=PHAVU_011G1647000g PE=4 SV=1
Gene Ontology
ID GO:0004672
description kinase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17503: 88440-109956 , PASA_asmbl_17504: 88440-109956
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000181_150 0.0 - - hypothetical protein PHAVU_011G1647000g, partial [Phaseolus vulgaris]
2 Hb_177103_010 0.173644318 - - PREDICTED: histone H2AX [Elaeis guineensis]
3 Hb_005679_070 0.1753838176 - - hypothetical protein M569_07741, partial [Genlisea aurea]
4 Hb_002815_050 0.1766511957 - - PREDICTED: succinate-semialdehyde dehydrogenase, mitochondrial [Populus euphratica]
5 Hb_032258_020 0.1834792515 - - PREDICTED: amidase 1-like isoform X2 [Malus domestica]
6 Hb_000329_560 0.187334837 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000160_160 0.1891518761 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Jatropha curcas]
8 Hb_002205_060 0.1983876527 - - -
9 Hb_169170_010 0.1995756601 - - PREDICTED: protein disulfide-isomerase 5-1 isoform X2 [Nelumbo nucifera]
10 Hb_007188_030 0.2083106929 - - PREDICTED: DNA topoisomerase 3-alpha-like [Malus domestica]
11 Hb_006846_140 0.2098935394 - - conserved hypothetical protein [Ricinus communis]
12 Hb_031866_050 0.2102386911 - - PREDICTED: uncharacterized protein LOC101756357 [Setaria italica]
13 Hb_000810_020 0.2103217455 - - -
14 Hb_026228_010 0.2131683223 - - conserved hypothetical protein [Ricinus communis]
15 Hb_003030_040 0.2132978948 - - hypothetical protein CISIN_1g0466212mg, partial [Citrus sinensis]
16 Hb_009119_020 0.2135650284 - - hypothetical protein CISIN_1g033708mg [Citrus sinensis]
17 Hb_007083_050 0.2188646387 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 12-like isoform X2 [Nelumbo nucifera]
18 Hb_008447_030 0.2190899176 - - -
19 Hb_068014_010 0.2203968401 - - hypothetical protein POPTR_0312s00200g, partial [Populus trichocarpa]
20 Hb_005318_020 0.2208061929 - - PREDICTED: lecithin-cholesterol acyltransferase-like 4 isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_000181_150 Hb_000181_150 Hb_177103_010 Hb_177103_010 Hb_000181_150--Hb_177103_010 Hb_005679_070 Hb_005679_070 Hb_000181_150--Hb_005679_070 Hb_002815_050 Hb_002815_050 Hb_000181_150--Hb_002815_050 Hb_032258_020 Hb_032258_020 Hb_000181_150--Hb_032258_020 Hb_000329_560 Hb_000329_560 Hb_000181_150--Hb_000329_560 Hb_000160_160 Hb_000160_160 Hb_000181_150--Hb_000160_160 Hb_169170_010 Hb_169170_010 Hb_177103_010--Hb_169170_010 Hb_007188_030 Hb_007188_030 Hb_177103_010--Hb_007188_030 Hb_006198_090 Hb_006198_090 Hb_177103_010--Hb_006198_090 Hb_003656_150 Hb_003656_150 Hb_177103_010--Hb_003656_150 Hb_177103_010--Hb_005679_070 Hb_068014_010 Hb_068014_010 Hb_177103_010--Hb_068014_010 Hb_005679_070--Hb_002815_050 Hb_005679_070--Hb_000329_560 Hb_001998_140 Hb_001998_140 Hb_005679_070--Hb_001998_140 Hb_005085_030 Hb_005085_030 Hb_005679_070--Hb_005085_030 Hb_005679_070--Hb_068014_010 Hb_006663_090 Hb_006663_090 Hb_005679_070--Hb_006663_090 Hb_003030_040 Hb_003030_040 Hb_002815_050--Hb_003030_040 Hb_002815_050--Hb_007188_030 Hb_002815_050--Hb_003656_150 Hb_022891_010 Hb_022891_010 Hb_002815_050--Hb_022891_010 Hb_002815_050--Hb_068014_010 Hb_032258_020--Hb_002815_050 Hb_032258_020--Hb_022891_010 Hb_032258_020--Hb_003030_040 Hb_032258_020--Hb_007188_030 Hb_032258_020--Hb_177103_010 Hb_026228_010 Hb_026228_010 Hb_000329_560--Hb_026228_010 Hb_000074_060 Hb_000074_060 Hb_000329_560--Hb_000074_060 Hb_000329_560--Hb_005085_030 Hb_004060_030 Hb_004060_030 Hb_000329_560--Hb_004060_030 Hb_000329_560--Hb_006663_090 Hb_002200_050 Hb_002200_050 Hb_000160_160--Hb_002200_050 Hb_000656_090 Hb_000656_090 Hb_000160_160--Hb_000656_090 Hb_012627_020 Hb_012627_020 Hb_000160_160--Hb_012627_020 Hb_008447_030 Hb_008447_030 Hb_000160_160--Hb_008447_030 Hb_000160_160--Hb_000329_560 Hb_025190_010 Hb_025190_010 Hb_000160_160--Hb_025190_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.248553 0.506531 0.992736 7.91342 1.76568 24.2883
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.40717 1.79911 1.16925 4.42461 6.2788

CAGE analysis