Hb_000181_190

Information

Type -
Description -
Location Contig181: 151522-156140
Sequence    

Annotation

kegg
ID rcu:RCOM_0201140
description protein phosphatase 2c, putative (EC:3.1.3.16)
nr
ID XP_012076525.1
description PREDICTED: probable protein phosphatase 2C 39 [Jatropha curcas]
swissprot
ID Q9LDA7
description Probable protein phosphatase 2C 39 OS=Arabidopsis thaliana GN=At3g15260 PE=2 SV=1
trembl
ID A0A067LN49
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15323 PE=4 SV=1
Gene Ontology
ID GO:0004722
description probable protein phosphatase 2c 39

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000181_190 0.0 - - PREDICTED: probable protein phosphatase 2C 39 [Jatropha curcas]
2 Hb_000264_120 0.2618130052 - - Stem-specific protein TSJT1, putative [Ricinus communis]
3 Hb_005375_050 0.2646360617 - - inorganic pyrophosphatase, putative [Ricinus communis]
4 Hb_000349_190 0.2651172445 transcription factor TF Family: GRF hypothetical protein POPTR_0001s08310g [Populus trichocarpa]
5 Hb_036790_030 0.2723201366 - - PREDICTED: UPF0544 protein C5orf45 homolog [Jatropha curcas]
6 Hb_004116_100 0.2799166345 - - Isoamyl acetate-hydrolyzing esterase, putative [Ricinus communis]
7 Hb_002307_020 0.2830207504 - - PREDICTED: histone H1-like [Jatropha curcas]
8 Hb_006275_060 0.2863725861 - - hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]
9 Hb_003399_100 0.2869879041 - - PREDICTED: putative cyclin-A3-1 [Jatropha curcas]
10 Hb_004116_120 0.288953011 - - PREDICTED: protein EARLY FLOWERING 4 [Jatropha curcas]
11 Hb_002045_190 0.2893110505 - - PREDICTED: histone H2A variant 1 [Jatropha curcas]
12 Hb_001431_110 0.2912140796 - - glycerol-3-phosphate transporter family protein [Populus trichocarpa]
13 Hb_004162_230 0.2920580691 - - PREDICTED: histone H2B [Jatropha curcas]
14 Hb_089889_010 0.2925755472 - - PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 [Jatropha curcas]
15 Hb_001507_080 0.29428378 - - PREDICTED: G2/mitotic-specific cyclin S13-7 [Jatropha curcas]
16 Hb_044662_050 0.2947768568 - - hypothetical protein POPTR_0002s08440g [Populus trichocarpa]
17 Hb_000155_150 0.2964905037 - - hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]
18 Hb_002007_040 0.2975862462 - - unnamed protein product [Coffea canephora]
19 Hb_001332_030 0.3008042244 - - hypothetical protein JCGZ_21111 [Jatropha curcas]
20 Hb_002979_030 0.3021179121 - - PREDICTED: serine/threonine-protein kinase Aurora-1 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000181_190 Hb_000181_190 Hb_000264_120 Hb_000264_120 Hb_000181_190--Hb_000264_120 Hb_005375_050 Hb_005375_050 Hb_000181_190--Hb_005375_050 Hb_000349_190 Hb_000349_190 Hb_000181_190--Hb_000349_190 Hb_036790_030 Hb_036790_030 Hb_000181_190--Hb_036790_030 Hb_004116_100 Hb_004116_100 Hb_000181_190--Hb_004116_100 Hb_002307_020 Hb_002307_020 Hb_000181_190--Hb_002307_020 Hb_000264_120--Hb_000349_190 Hb_002641_040 Hb_002641_040 Hb_000264_120--Hb_002641_040 Hb_004129_080 Hb_004129_080 Hb_000264_120--Hb_004129_080 Hb_089889_010 Hb_089889_010 Hb_000264_120--Hb_089889_010 Hb_004163_020 Hb_004163_020 Hb_000264_120--Hb_004163_020 Hb_003399_100 Hb_003399_100 Hb_005375_050--Hb_003399_100 Hb_118282_010 Hb_118282_010 Hb_005375_050--Hb_118282_010 Hb_002045_190 Hb_002045_190 Hb_005375_050--Hb_002045_190 Hb_005375_050--Hb_089889_010 Hb_014720_010 Hb_014720_010 Hb_005375_050--Hb_014720_010 Hb_004116_120 Hb_004116_120 Hb_005375_050--Hb_004116_120 Hb_000349_190--Hb_004163_020 Hb_000349_190--Hb_004129_080 Hb_000975_140 Hb_000975_140 Hb_000349_190--Hb_000975_140 Hb_001246_050 Hb_001246_050 Hb_000349_190--Hb_001246_050 Hb_000042_040 Hb_000042_040 Hb_000349_190--Hb_000042_040 Hb_010998_050 Hb_010998_050 Hb_036790_030--Hb_010998_050 Hb_000345_130 Hb_000345_130 Hb_036790_030--Hb_000345_130 Hb_036790_030--Hb_002307_020 Hb_000739_270 Hb_000739_270 Hb_036790_030--Hb_000739_270 Hb_002007_040 Hb_002007_040 Hb_036790_030--Hb_002007_040 Hb_000349_230 Hb_000349_230 Hb_036790_030--Hb_000349_230 Hb_030627_070 Hb_030627_070 Hb_004116_100--Hb_030627_070 Hb_000740_040 Hb_000740_040 Hb_004116_100--Hb_000740_040 Hb_003077_150 Hb_003077_150 Hb_004116_100--Hb_003077_150 Hb_004116_100--Hb_118282_010 Hb_004116_100--Hb_002045_190 Hb_068194_010 Hb_068194_010 Hb_004116_100--Hb_068194_010 Hb_006275_060 Hb_006275_060 Hb_002307_020--Hb_006275_060 Hb_002307_020--Hb_002007_040 Hb_000051_080 Hb_000051_080 Hb_002307_020--Hb_000051_080 Hb_003784_040 Hb_003784_040 Hb_002307_020--Hb_003784_040 Hb_000155_150 Hb_000155_150 Hb_002307_020--Hb_000155_150 Hb_001780_080 Hb_001780_080 Hb_002307_020--Hb_001780_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0216997 0 1.32949 0.139637 0.0203385 0.0955504
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.298116 0.351706 0.0720037 0.0157093 0

CAGE analysis