Hb_000181_210

Information

Type -
Description -
Location Contig181: 163564-166722
Sequence    

Annotation

kegg
ID rcu:RCOM_0589610
description Phytosulfokine receptor precursor, putative (EC:2.7.12.2 3.1.3.16 1.3.1.74)
nr
ID XP_002528241.1
description Phytosulfokine receptor precursor, putative [Ricinus communis]
swissprot
ID Q9FN37
description Phytosulfokine receptor 2 OS=Arabidopsis thaliana GN=PSKR2 PE=2 SV=1
trembl
ID B9SQH2
description Phytosulfokine receptor, putative OS=Ricinus communis GN=RCOM_0589610 PE=4 SV=1
Gene Ontology
ID GO:0004672
description phytosulfokine receptor 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17511: 165617-165769 , PASA_asmbl_17512: 165957-166110 , PASA_asmbl_17515: 167224-167335
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000181_210 0.0 - - Phytosulfokine receptor precursor, putative [Ricinus communis]
2 Hb_026549_050 0.0880127687 - - PREDICTED: uncharacterized protein LOC105636246 isoform X2 [Jatropha curcas]
3 Hb_000832_280 0.0882289935 - - PREDICTED: aquaporin TIP1-3 [Jatropha curcas]
4 Hb_042509_020 0.1027287571 - - hypothetical protein JCGZ_19555 [Jatropha curcas]
5 Hb_004324_030 0.1092843001 - - PREDICTED: probable protein phosphatase 2C 8 [Jatropha curcas]
6 Hb_001922_060 0.1104089588 - - ATP binding protein, putative [Ricinus communis]
7 Hb_000056_350 0.1309250411 - - PREDICTED: uncharacterized protein LOC105630437 [Jatropha curcas]
8 Hb_000540_040 0.131858164 - - PREDICTED: chitinase 2 [Amborella trichopoda]
9 Hb_000002_360 0.1402709548 - - hypothetical protein POPTR_0008s16470g [Populus trichocarpa]
10 Hb_001287_060 0.1403413364 transcription factor TF Family: Orphans Salt-tolerance protein, putative [Ricinus communis]
11 Hb_001159_170 0.1472748133 - - PREDICTED: AT-hook motif nuclear-localized protein 1 [Jatropha curcas]
12 Hb_000003_020 0.1515564028 - - PREDICTED: uncharacterized protein LOC105631161 [Jatropha curcas]
13 Hb_080477_080 0.1531727126 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4 isoform X1 [Gossypium raimondii]
14 Hb_003142_060 0.1538832235 - - PREDICTED: glutamate synthase 1 [NADH], chloroplastic isoform X1 [Jatropha curcas]
15 Hb_000059_300 0.1572304991 - - caspase, putative [Ricinus communis]
16 Hb_000216_050 0.1582584127 - - PREDICTED: indole-3-acetaldehyde oxidase-like [Jatropha curcas]
17 Hb_000834_040 0.1594570924 - - PREDICTED: ras-related protein Rab7 [Cucumis melo]
18 Hb_001054_090 0.1601542446 - - Potassium channel SKOR, putative [Ricinus communis]
19 Hb_006816_420 0.1636201751 - - hypothetical protein JCGZ_23261 [Jatropha curcas]
20 Hb_001341_200 0.168719489 transcription factor TF Family: ARF PREDICTED: auxin response factor 4 [Jatropha curcas]

Gene co-expression network

sample Hb_000181_210 Hb_000181_210 Hb_026549_050 Hb_026549_050 Hb_000181_210--Hb_026549_050 Hb_000832_280 Hb_000832_280 Hb_000181_210--Hb_000832_280 Hb_042509_020 Hb_042509_020 Hb_000181_210--Hb_042509_020 Hb_004324_030 Hb_004324_030 Hb_000181_210--Hb_004324_030 Hb_001922_060 Hb_001922_060 Hb_000181_210--Hb_001922_060 Hb_000056_350 Hb_000056_350 Hb_000181_210--Hb_000056_350 Hb_026549_050--Hb_001922_060 Hb_026549_050--Hb_004324_030 Hb_000002_360 Hb_000002_360 Hb_026549_050--Hb_000002_360 Hb_000003_020 Hb_000003_020 Hb_026549_050--Hb_000003_020 Hb_026549_050--Hb_000832_280 Hb_001287_060 Hb_001287_060 Hb_000832_280--Hb_001287_060 Hb_000832_280--Hb_000056_350 Hb_000832_280--Hb_004324_030 Hb_000832_280--Hb_000002_360 Hb_042509_020--Hb_004324_030 Hb_000834_040 Hb_000834_040 Hb_042509_020--Hb_000834_040 Hb_042509_020--Hb_000832_280 Hb_042509_020--Hb_026549_050 Hb_001159_170 Hb_001159_170 Hb_042509_020--Hb_001159_170 Hb_002739_040 Hb_002739_040 Hb_004324_030--Hb_002739_040 Hb_004324_030--Hb_000003_020 Hb_000216_050 Hb_000216_050 Hb_004324_030--Hb_000216_050 Hb_001922_060--Hb_000832_280 Hb_001922_060--Hb_000002_360 Hb_001922_060--Hb_004324_030 Hb_000567_180 Hb_000567_180 Hb_001922_060--Hb_000567_180 Hb_002571_070 Hb_002571_070 Hb_000056_350--Hb_002571_070 Hb_000059_300 Hb_000059_300 Hb_000056_350--Hb_000059_300 Hb_000540_040 Hb_000540_040 Hb_000056_350--Hb_000540_040 Hb_000056_350--Hb_000002_360
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.1416 4.84099 2.2542 8.23941 0.0242576 0.0382664
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.686868 1.13509 0.786475 7.22264 2.74725

CAGE analysis