Hb_000181_240

Information

Type -
Description -
Location Contig181: 193431-202971
Sequence    

Annotation

kegg
ID rcu:RCOM_0590850
description hypothetical protein
nr
ID XP_012076623.1
description PREDICTED: uncharacterized protein LOC105637672 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LN57
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15333 PE=4 SV=1
Gene Ontology
ID GO:0031072
description embryo defective 2737

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17520: 193434-202974
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000181_240 0.0 - - PREDICTED: uncharacterized protein LOC105637672 [Jatropha curcas]
2 Hb_001279_030 0.0689271865 - - PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform-like [Jatropha curcas]
3 Hb_000346_060 0.0789389039 - - hypothetical protein JCGZ_19590 [Jatropha curcas]
4 Hb_000184_170 0.0816331629 - - hypothetical protein RCOM_1213430 [Ricinus communis]
5 Hb_002374_240 0.0858700377 - - nucellin, putative [Ricinus communis]
6 Hb_000224_160 0.0877262148 - - PREDICTED: phenylalanine--tRNA ligase, chloroplastic/mitochondrial [Jatropha curcas]
7 Hb_000679_020 0.0883049009 transcription factor TF Family: HB PREDICTED: transcription initiation factor TFIID subunit 11 [Jatropha curcas]
8 Hb_000076_130 0.0902298663 - - PREDICTED: tryptophan synthase beta chain 1 [Jatropha curcas]
9 Hb_000033_110 0.0910173516 - - hypothetical protein JCGZ_19253 [Jatropha curcas]
10 Hb_001498_010 0.0913466883 - - PREDICTED: uncharacterized protein LOC105648994 [Jatropha curcas]
11 Hb_036790_080 0.0923419028 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 39 [Jatropha curcas]
12 Hb_001604_120 0.0929597304 - - PREDICTED: hemK methyltransferase family member 1 isoform X2 [Jatropha curcas]
13 Hb_000039_150 0.0935570821 - - PREDICTED: lysine-specific demethylase JMJ25 isoform X1 [Jatropha curcas]
14 Hb_011228_010 0.0936687375 - - PREDICTED: vacuolar protein sorting-associated protein 54, chloroplastic isoform X1 [Jatropha curcas]
15 Hb_021346_030 0.0939235037 - - PREDICTED: uncharacterized protein LOC105141875 [Populus euphratica]
16 Hb_001489_050 0.0956932473 - - PREDICTED: protein TWIN LOV 1 isoform X1 [Jatropha curcas]
17 Hb_004003_040 0.0960983529 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
18 Hb_003020_030 0.0966136254 - - PREDICTED: protein TOC75-3, chloroplastic-like [Populus euphratica]
19 Hb_000190_030 0.0980164081 - - PREDICTED: BEACH domain-containing protein lvsA-like [Pyrus x bretschneideri]
20 Hb_002849_100 0.0980259439 - - PREDICTED: mechanosensitive ion channel protein 1, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_000181_240 Hb_000181_240 Hb_001279_030 Hb_001279_030 Hb_000181_240--Hb_001279_030 Hb_000346_060 Hb_000346_060 Hb_000181_240--Hb_000346_060 Hb_000184_170 Hb_000184_170 Hb_000181_240--Hb_000184_170 Hb_002374_240 Hb_002374_240 Hb_000181_240--Hb_002374_240 Hb_000224_160 Hb_000224_160 Hb_000181_240--Hb_000224_160 Hb_000679_020 Hb_000679_020 Hb_000181_240--Hb_000679_020 Hb_011228_010 Hb_011228_010 Hb_001279_030--Hb_011228_010 Hb_005291_050 Hb_005291_050 Hb_001279_030--Hb_005291_050 Hb_006501_090 Hb_006501_090 Hb_001279_030--Hb_006501_090 Hb_000039_150 Hb_000039_150 Hb_001279_030--Hb_000039_150 Hb_015807_050 Hb_015807_050 Hb_001279_030--Hb_015807_050 Hb_007657_010 Hb_007657_010 Hb_000346_060--Hb_007657_010 Hb_000343_250 Hb_000343_250 Hb_000346_060--Hb_000343_250 Hb_004003_040 Hb_004003_040 Hb_000346_060--Hb_004003_040 Hb_004097_070 Hb_004097_070 Hb_000346_060--Hb_004097_070 Hb_002732_040 Hb_002732_040 Hb_000346_060--Hb_002732_040 Hb_004963_030 Hb_004963_030 Hb_000346_060--Hb_004963_030 Hb_003153_010 Hb_003153_010 Hb_000184_170--Hb_003153_010 Hb_000184_170--Hb_000346_060 Hb_001700_010 Hb_001700_010 Hb_000184_170--Hb_001700_010 Hb_008959_010 Hb_008959_010 Hb_000184_170--Hb_008959_010 Hb_022693_140 Hb_022693_140 Hb_000184_170--Hb_022693_140 Hb_000184_170--Hb_001279_030 Hb_000200_030 Hb_000200_030 Hb_002374_240--Hb_000200_030 Hb_002374_240--Hb_000184_170 Hb_002374_240--Hb_000224_160 Hb_001584_200 Hb_001584_200 Hb_002374_240--Hb_001584_200 Hb_000295_080 Hb_000295_080 Hb_002374_240--Hb_000295_080 Hb_000224_160--Hb_001584_200 Hb_012022_150 Hb_012022_150 Hb_000224_160--Hb_012022_150 Hb_000224_160--Hb_022693_140 Hb_011716_130 Hb_011716_130 Hb_000224_160--Hb_011716_130 Hb_002163_040 Hb_002163_040 Hb_000224_160--Hb_002163_040 Hb_000224_160--Hb_000184_170 Hb_000864_030 Hb_000864_030 Hb_000679_020--Hb_000864_030 Hb_000661_030 Hb_000661_030 Hb_000679_020--Hb_000661_030 Hb_000174_170 Hb_000174_170 Hb_000679_020--Hb_000174_170 Hb_000563_420 Hb_000563_420 Hb_000679_020--Hb_000563_420 Hb_004920_090 Hb_004920_090 Hb_000679_020--Hb_004920_090 Hb_000906_100 Hb_000906_100 Hb_000679_020--Hb_000906_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.7699 13.9436 26.7881 19.0267 28.779 28.3745
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.5638 13.4097 23.2696 16.2272 42.8579

CAGE analysis