Hb_000181_260

Information

Type -
Description -
Location Contig181: 220993-221694
Sequence    

Annotation

kegg
ID pop:POPTR_0001s40990g
description hypothetical protein
nr
ID XP_011043812.1
description PREDICTED: uncharacterized protein LOC105139156 [Populus euphratica]
swissprot
ID Q9LDZ1
description VQ motif-containing protein 19 OS=Arabidopsis thaliana GN=VQ19 PE=1 SV=1
trembl
ID B9N1G0
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s40990g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17523: 220864-221393
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000181_260 0.0 - - PREDICTED: uncharacterized protein LOC105139156 [Populus euphratica]
2 Hb_002811_110 0.0797037469 - - PREDICTED: probable serine/threonine-protein kinase WNK9 [Jatropha curcas]
3 Hb_139461_010 0.0919176519 desease resistance Gene Name: NB-ARC Cc-nbs-lrr resistance protein, putative [Theobroma cacao]
4 Hb_000571_060 0.0967094303 - - PREDICTED: uncharacterized protein LOC105648112 [Jatropha curcas]
5 Hb_000120_320 0.0989812041 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
6 Hb_008021_040 0.0993758719 - - PREDICTED: AP2-like ethylene-responsive transcription factor ANT [Jatropha curcas]
7 Hb_002553_070 0.1025482293 - - PREDICTED: RING-H2 finger protein ATL16 [Jatropha curcas]
8 Hb_007237_080 0.1052044247 - - amino acid transporter, putative [Ricinus communis]
9 Hb_002236_010 0.1112078544 - - PREDICTED: bidirectional sugar transporter SWEET4 [Jatropha curcas]
10 Hb_002518_020 0.1177129388 - - PREDICTED: uncharacterized protein LOC105631164 [Jatropha curcas]
11 Hb_007625_030 0.118875546 - - unknown [Medicago truncatula]
12 Hb_001117_180 0.1201821876 - - PREDICTED: uncharacterized protein LOC105629703 isoform X1 [Jatropha curcas]
13 Hb_009838_120 0.1216042629 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA13 isoform X1 [Jatropha curcas]
14 Hb_014361_040 0.1229756604 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
15 Hb_149055_010 0.1230046024 - - cinnamate 4-hydroxylase [Leucaena leucocephala]
16 Hb_043789_010 0.1236368003 transcription factor TF Family: AP2 hypothetical protein VITISV_034131 [Vitis vinifera]
17 Hb_002370_050 0.1245416946 - - hypothetical protein JCGZ_18849 [Jatropha curcas]
18 Hb_000329_010 0.1245639431 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Jatropha curcas]
19 Hb_007632_130 0.1257288127 - - PREDICTED: nudix hydrolase 10-like isoform X1 [Jatropha curcas]
20 Hb_002641_140 0.1258108002 - - protein phosphatase 2c, putative [Ricinus communis]

Gene co-expression network

sample Hb_000181_260 Hb_000181_260 Hb_002811_110 Hb_002811_110 Hb_000181_260--Hb_002811_110 Hb_139461_010 Hb_139461_010 Hb_000181_260--Hb_139461_010 Hb_000571_060 Hb_000571_060 Hb_000181_260--Hb_000571_060 Hb_000120_320 Hb_000120_320 Hb_000181_260--Hb_000120_320 Hb_008021_040 Hb_008021_040 Hb_000181_260--Hb_008021_040 Hb_002553_070 Hb_002553_070 Hb_000181_260--Hb_002553_070 Hb_002811_110--Hb_000571_060 Hb_001117_180 Hb_001117_180 Hb_002811_110--Hb_001117_180 Hb_000162_070 Hb_000162_070 Hb_002811_110--Hb_000162_070 Hb_007237_080 Hb_007237_080 Hb_002811_110--Hb_007237_080 Hb_002811_110--Hb_008021_040 Hb_139461_010--Hb_008021_040 Hb_043789_010 Hb_043789_010 Hb_139461_010--Hb_043789_010 Hb_139461_010--Hb_002811_110 Hb_009838_120 Hb_009838_120 Hb_139461_010--Hb_009838_120 Hb_001048_070 Hb_001048_070 Hb_139461_010--Hb_001048_070 Hb_002236_010 Hb_002236_010 Hb_000571_060--Hb_002236_010 Hb_000571_060--Hb_002553_070 Hb_000571_060--Hb_007237_080 Hb_008725_020 Hb_008725_020 Hb_000571_060--Hb_008725_020 Hb_149055_010 Hb_149055_010 Hb_000120_320--Hb_149055_010 Hb_001677_090 Hb_001677_090 Hb_000120_320--Hb_001677_090 Hb_002641_140 Hb_002641_140 Hb_000120_320--Hb_002641_140 Hb_019026_050 Hb_019026_050 Hb_000120_320--Hb_019026_050 Hb_001138_070 Hb_001138_070 Hb_000120_320--Hb_001138_070 Hb_008021_040--Hb_002641_140 Hb_189208_050 Hb_189208_050 Hb_008021_040--Hb_189208_050 Hb_024868_010 Hb_024868_010 Hb_008021_040--Hb_024868_010 Hb_008021_040--Hb_001048_070 Hb_029142_040 Hb_029142_040 Hb_008021_040--Hb_029142_040 Hb_002553_070--Hb_002236_010 Hb_023956_010 Hb_023956_010 Hb_002553_070--Hb_023956_010 Hb_002553_070--Hb_019026_050 Hb_005679_120 Hb_005679_120 Hb_002553_070--Hb_005679_120 Hb_006846_030 Hb_006846_030 Hb_002553_070--Hb_006846_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.24587 4.86107 4.21672 16.2408 0 0.154764
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 6.46894 4.38683

CAGE analysis