Hb_000181_270

Information

Type -
Description -
Location Contig181: 229589-234221
Sequence    

Annotation

kegg
ID rcu:RCOM_0254000
description ATP binding protein, putative
nr
ID XP_002533903.1
description ATP binding protein, putative [Ricinus communis]
swissprot
ID F4HPR5
description Dynamin-related protein 5A OS=Arabidopsis thaliana GN=DRP5A PE=2 SV=1
trembl
ID B9T6N4
description ATP binding protein, putative OS=Ricinus communis GN=RCOM_0254000 PE=4 SV=1
Gene Ontology
ID GO:0003924
description dynamin-related protein 5a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17524: 229685-231305 , PASA_asmbl_17525: 231400-232371 , PASA_asmbl_17526: 232425-233174
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000181_270 0.0 - - ATP binding protein, putative [Ricinus communis]
2 Hb_011485_030 0.0782045978 - - PREDICTED: uncharacterized protein LOC105647814 [Jatropha curcas]
3 Hb_004920_050 0.1005120978 - - DNA replication licensing factor MCM7, putative [Ricinus communis]
4 Hb_000288_090 0.1037405227 - - unnamed protein product [Vitis vinifera]
5 Hb_002518_200 0.130175819 - - Proliferating cell nuclear antigen [Theobroma cacao]
6 Hb_000529_040 0.1334058477 - - PREDICTED: uncharacterized protein LOC105641671 [Jatropha curcas]
7 Hb_000890_020 0.1381134204 - - Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]
8 Hb_002540_070 0.1391120955 - - PREDICTED: protein cornichon homolog 1 [Jatropha curcas]
9 Hb_006970_130 0.1455199476 - - PREDICTED: histone H3.3-like [Colobus angolensis palliatus]
10 Hb_002400_050 0.1466070912 - - PREDICTED: uncharacterized protein LOC105637632 isoform X1 [Jatropha curcas]
11 Hb_000088_240 0.1514377573 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
12 Hb_000260_610 0.1517647167 - - PREDICTED: cell division cycle 20.1, cofactor of APC complex-like [Jatropha curcas]
13 Hb_007123_080 0.157844569 - - big map kinase/bmk, putative [Ricinus communis]
14 Hb_093458_020 0.1588786506 desease resistance Gene Name: AAA PREDICTED: chromosome transmission fidelity protein 18 homolog [Jatropha curcas]
15 Hb_007545_110 0.159642519 - - catalytic, putative [Ricinus communis]
16 Hb_005901_030 0.1598181074 - - PREDICTED: phragmoplast orienting kinesin 2 isoform X1 [Jatropha curcas]
17 Hb_002078_230 0.1609150256 - - PREDICTED: HORMA domain-containing protein 1 [Jatropha curcas]
18 Hb_000077_110 0.1621368912 - - PREDICTED: uncharacterized protein LOC105646935 [Jatropha curcas]
19 Hb_000566_130 0.1641509035 - - PREDICTED: probable DNA primase large subunit isoform X2 [Jatropha curcas]
20 Hb_004007_130 0.1687407217 - - PREDICTED: uncharacterized protein LOC105639843 [Jatropha curcas]

Gene co-expression network

sample Hb_000181_270 Hb_000181_270 Hb_011485_030 Hb_011485_030 Hb_000181_270--Hb_011485_030 Hb_004920_050 Hb_004920_050 Hb_000181_270--Hb_004920_050 Hb_000288_090 Hb_000288_090 Hb_000181_270--Hb_000288_090 Hb_002518_200 Hb_002518_200 Hb_000181_270--Hb_002518_200 Hb_000529_040 Hb_000529_040 Hb_000181_270--Hb_000529_040 Hb_000890_020 Hb_000890_020 Hb_000181_270--Hb_000890_020 Hb_011485_030--Hb_004920_050 Hb_011485_030--Hb_000288_090 Hb_005901_030 Hb_005901_030 Hb_011485_030--Hb_005901_030 Hb_000566_130 Hb_000566_130 Hb_011485_030--Hb_000566_130 Hb_011485_030--Hb_002518_200 Hb_000077_110 Hb_000077_110 Hb_004920_050--Hb_000077_110 Hb_004920_050--Hb_000890_020 Hb_004920_050--Hb_002518_200 Hb_004920_050--Hb_000566_130 Hb_000365_210 Hb_000365_210 Hb_000288_090--Hb_000365_210 Hb_006970_130 Hb_006970_130 Hb_000288_090--Hb_006970_130 Hb_000003_060 Hb_000003_060 Hb_000288_090--Hb_000003_060 Hb_000260_650 Hb_000260_650 Hb_000288_090--Hb_000260_650 Hb_000288_090--Hb_004920_050 Hb_000692_210 Hb_000692_210 Hb_002518_200--Hb_000692_210 Hb_000003_740 Hb_000003_740 Hb_002518_200--Hb_000003_740 Hb_000111_390 Hb_000111_390 Hb_002518_200--Hb_000111_390 Hb_000134_030 Hb_000134_030 Hb_002518_200--Hb_000134_030 Hb_086639_050 Hb_086639_050 Hb_000529_040--Hb_086639_050 Hb_080147_020 Hb_080147_020 Hb_000529_040--Hb_080147_020 Hb_001117_080 Hb_001117_080 Hb_000529_040--Hb_001117_080 Hb_000529_040--Hb_002518_200 Hb_000567_090 Hb_000567_090 Hb_000529_040--Hb_000567_090 Hb_002400_050 Hb_002400_050 Hb_000890_020--Hb_002400_050 Hb_002540_070 Hb_002540_070 Hb_000890_020--Hb_002540_070 Hb_000086_180 Hb_000086_180 Hb_000890_020--Hb_000086_180 Hb_000008_390 Hb_000008_390 Hb_000890_020--Hb_000008_390
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.54388 1.66027 8.14702 3.32236 0.431723 0.373428
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.531162 0.240652 0.314432 2.6591 0.620379

CAGE analysis