Hb_000181_310

Information

Type -
Description -
Location Contig181: 244871-250318
Sequence    

Annotation

kegg
ID rcu:RCOM_0254030
description DNA double-strand break repair rad50 ATPase, putative
nr
ID KDP27063.1
description hypothetical protein JCGZ_20998 [Jatropha curcas]
swissprot
ID O23144
description Proton pump-interactor 1 OS=Arabidopsis thaliana GN=PPI1 PE=1 SV=2
trembl
ID A0A067JW55
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20998 PE=4 SV=1
Gene Ontology
ID GO:0005783
description proton pump-interactor 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17534: 245289-250307
cDNA
(Sanger)
(ID:Location)		 034_E05.ab1: 247764-250195 , 046_O24.ab1: 249072-250302

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000181_310 0.0 - - hypothetical protein JCGZ_20998 [Jatropha curcas]
2 Hb_007757_100 0.0731859973 - - PREDICTED: ER membrane protein complex subunit 3-like [Jatropha curcas]
3 Hb_003666_050 0.0811228915 - - PREDICTED: NASP-related protein sim3 [Jatropha curcas]
4 Hb_003580_040 0.0861311843 - - PREDICTED: protein ENHANCED DOWNY MILDEW 2-like [Jatropha curcas]
5 Hb_000540_140 0.0877112426 - - zinc binding dehydrogenase, putative [Ricinus communis]
6 Hb_004143_070 0.0892268866 - - cytochrome P450, putative [Ricinus communis]
7 Hb_009913_050 0.0917181008 - - PREDICTED: partner of Y14 and mago-like [Jatropha curcas]
8 Hb_007305_010 0.0991893906 - - PREDICTED: girdin-like [Jatropha curcas]
9 Hb_001195_030 0.1011376047 - - auxilin, putative [Ricinus communis]
10 Hb_000134_360 0.1035066666 - - PREDICTED: protein gar2 [Jatropha curcas]
11 Hb_002025_140 0.1058342987 - - PREDICTED: UBX domain-containing protein 2 isoform X1 [Jatropha curcas]
12 Hb_000318_140 0.1105197539 - - Kinase superfamily protein isoform 2 [Theobroma cacao]
13 Hb_002739_080 0.1108112778 - - cystathionine beta-lyase, putative [Ricinus communis]
14 Hb_003216_110 0.1109682371 - - PREDICTED: vacuolar protein-sorting-associated protein 11 homolog [Jatropha curcas]
15 Hb_007668_020 0.1121091388 - - PREDICTED: uncharacterized protein LOC105631102 [Jatropha curcas]
16 Hb_000608_340 0.1146003652 - - PREDICTED: putative RNA-binding protein Luc7-like 2 [Populus euphratica]
17 Hb_025557_020 0.1146172616 - - PREDICTED: activating signal cointegrator 1 [Jatropha curcas]
18 Hb_004531_090 0.1153723418 - - PREDICTED: VHS domain-containing protein At3g16270 [Jatropha curcas]
19 Hb_000849_100 0.1156620057 - - PREDICTED: uncharacterized protein LOC105644134 [Jatropha curcas]
20 Hb_000573_040 0.1158991742 - - hypothetical protein JCGZ_19524 [Jatropha curcas]

Gene co-expression network

sample Hb_000181_310 Hb_000181_310 Hb_007757_100 Hb_007757_100 Hb_000181_310--Hb_007757_100 Hb_003666_050 Hb_003666_050 Hb_000181_310--Hb_003666_050 Hb_003580_040 Hb_003580_040 Hb_000181_310--Hb_003580_040 Hb_000540_140 Hb_000540_140 Hb_000181_310--Hb_000540_140 Hb_004143_070 Hb_004143_070 Hb_000181_310--Hb_004143_070 Hb_009913_050 Hb_009913_050 Hb_000181_310--Hb_009913_050 Hb_007757_100--Hb_003580_040 Hb_001279_330 Hb_001279_330 Hb_007757_100--Hb_001279_330 Hb_007668_020 Hb_007668_020 Hb_007757_100--Hb_007668_020 Hb_000199_080 Hb_000199_080 Hb_007757_100--Hb_000199_080 Hb_007757_100--Hb_009913_050 Hb_001195_030 Hb_001195_030 Hb_003666_050--Hb_001195_030 Hb_000608_340 Hb_000608_340 Hb_003666_050--Hb_000608_340 Hb_000211_090 Hb_000211_090 Hb_003666_050--Hb_000211_090 Hb_000185_090 Hb_000185_090 Hb_003666_050--Hb_000185_090 Hb_174865_050 Hb_174865_050 Hb_003666_050--Hb_174865_050 Hb_003580_040--Hb_003666_050 Hb_003580_040--Hb_000608_340 Hb_019871_020 Hb_019871_020 Hb_003580_040--Hb_019871_020 Hb_003580_040--Hb_001195_030 Hb_000540_140--Hb_001195_030 Hb_011644_020 Hb_011644_020 Hb_000540_140--Hb_011644_020 Hb_025557_020 Hb_025557_020 Hb_000540_140--Hb_025557_020 Hb_007305_010 Hb_007305_010 Hb_000540_140--Hb_007305_010 Hb_003006_060 Hb_003006_060 Hb_000540_140--Hb_003006_060 Hb_046615_020 Hb_046615_020 Hb_004143_070--Hb_046615_020 Hb_002493_090 Hb_002493_090 Hb_004143_070--Hb_002493_090 Hb_002159_040 Hb_002159_040 Hb_004143_070--Hb_002159_040 Hb_000244_240 Hb_000244_240 Hb_004143_070--Hb_000244_240 Hb_033594_020 Hb_033594_020 Hb_004143_070--Hb_033594_020 Hb_005214_060 Hb_005214_060 Hb_009913_050--Hb_005214_060 Hb_002942_080 Hb_002942_080 Hb_009913_050--Hb_002942_080 Hb_000318_140 Hb_000318_140 Hb_009913_050--Hb_000318_140 Hb_001396_290 Hb_001396_290 Hb_009913_050--Hb_001396_290 Hb_002048_090 Hb_002048_090 Hb_009913_050--Hb_002048_090 Hb_009913_050--Hb_025557_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
384.434 86.4732 88.9367 58.3325 454.39 375.982
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
174.219 42.6102 63.3254 67.5875 82.7569

CAGE analysis