Hb_000181_330

Information

Type -
Description -
Location Contig181: 280273-288723
Sequence    

Annotation

kegg
ID rcu:RCOM_0073590
description ubiquitin ligase protein cop1, putative (EC:1.3.1.74)
nr
ID XP_002533551.1
description ubiquitin ligase protein cop1, putative [Ricinus communis]
swissprot
ID Q9LJR3
description Protein SPA1-RELATED 3 OS=Arabidopsis thaliana GN=SPA3 PE=1 SV=1
trembl
ID B9T5N2
description Ubiquitin ligase protein cop1, putative OS=Ricinus communis GN=RCOM_0073590 PE=4 SV=1
Gene Ontology
ID GO:0004672
description protein spa1-related 3 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17537: 280373-287987 , PASA_asmbl_17538: 280373-287987 , PASA_asmbl_17539: 281080-287987 , PASA_asmbl_17540: 281080-287987
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000181_330 0.0 - - ubiquitin ligase protein cop1, putative [Ricinus communis]
2 Hb_000243_060 0.091002341 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 5-like [Jatropha curcas]
3 Hb_000322_030 0.0914621783 - - PREDICTED: uncharacterized protein LOC105637911 [Jatropha curcas]
4 Hb_002311_280 0.1014749821 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
5 Hb_000272_030 0.1130151456 - - PREDICTED: WD repeat-containing protein 76 isoform X1 [Jatropha curcas]
6 Hb_004531_170 0.1160054845 - - PREDICTED: probable inactive nicotinamidase At3g16190 [Jatropha curcas]
7 Hb_000173_270 0.116068664 - - PREDICTED: mitogen-activated protein kinase 15 isoform X2 [Jatropha curcas]
8 Hb_001141_350 0.1170605504 - - hypothetical protein JCGZ_02174 [Jatropha curcas]
9 Hb_000227_400 0.1206821373 - - lipoxygenase, putative [Ricinus communis]
10 Hb_033006_020 0.1245498883 - - Aspartate aminotransferase, putative [Ricinus communis]
11 Hb_002078_390 0.1251377818 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 2 [Jatropha curcas]
12 Hb_000260_410 0.1263258344 - - PREDICTED: protein LURP-one-related 8 [Jatropha curcas]
13 Hb_001153_100 0.1266102138 transcription factor TF Family: HB PREDICTED: homeobox protein HD1 [Jatropha curcas]
14 Hb_000062_130 0.1270224088 - - cytochrome P450, putative [Ricinus communis]
15 Hb_000645_260 0.1294569791 - - PREDICTED: uncharacterized protein LOC105643508 [Jatropha curcas]
16 Hb_003055_070 0.1299966706 - - PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog isoform X1 [Jatropha curcas]
17 Hb_000417_050 0.1310785438 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase MRH1 [Jatropha curcas]
18 Hb_000049_280 0.1313543498 - - PREDICTED: ribokinase-like isoform X4 [Jatropha curcas]
19 Hb_001936_190 0.1330288183 - - hypothetical protein JCGZ_17780 [Jatropha curcas]
20 Hb_000982_100 0.1348097189 transcription factor TF Family: bHLH PREDICTED: transcription factor PIF1-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000181_330 Hb_000181_330 Hb_000243_060 Hb_000243_060 Hb_000181_330--Hb_000243_060 Hb_000322_030 Hb_000322_030 Hb_000181_330--Hb_000322_030 Hb_002311_280 Hb_002311_280 Hb_000181_330--Hb_002311_280 Hb_000272_030 Hb_000272_030 Hb_000181_330--Hb_000272_030 Hb_004531_170 Hb_004531_170 Hb_000181_330--Hb_004531_170 Hb_000173_270 Hb_000173_270 Hb_000181_330--Hb_000173_270 Hb_010868_040 Hb_010868_040 Hb_000243_060--Hb_010868_040 Hb_002078_390 Hb_002078_390 Hb_000243_060--Hb_002078_390 Hb_000227_400 Hb_000227_400 Hb_000243_060--Hb_000227_400 Hb_010381_040 Hb_010381_040 Hb_000243_060--Hb_010381_040 Hb_000926_040 Hb_000926_040 Hb_000243_060--Hb_000926_040 Hb_000099_170 Hb_000099_170 Hb_000322_030--Hb_000099_170 Hb_000390_210 Hb_000390_210 Hb_000322_030--Hb_000390_210 Hb_000388_080 Hb_000388_080 Hb_000322_030--Hb_000388_080 Hb_000958_120 Hb_000958_120 Hb_000322_030--Hb_000958_120 Hb_000322_030--Hb_000227_400 Hb_007130_020 Hb_007130_020 Hb_002311_280--Hb_007130_020 Hb_022092_110 Hb_022092_110 Hb_002311_280--Hb_022092_110 Hb_003266_090 Hb_003266_090 Hb_002311_280--Hb_003266_090 Hb_033006_020 Hb_033006_020 Hb_002311_280--Hb_033006_020 Hb_044653_050 Hb_044653_050 Hb_002311_280--Hb_044653_050 Hb_006570_060 Hb_006570_060 Hb_000272_030--Hb_006570_060 Hb_000260_410 Hb_000260_410 Hb_000272_030--Hb_000260_410 Hb_000941_090 Hb_000941_090 Hb_000272_030--Hb_000941_090 Hb_002838_010 Hb_002838_010 Hb_000272_030--Hb_002838_010 Hb_000272_030--Hb_000173_270 Hb_000107_090 Hb_000107_090 Hb_000272_030--Hb_000107_090 Hb_000622_050 Hb_000622_050 Hb_004531_170--Hb_000622_050 Hb_000982_100 Hb_000982_100 Hb_004531_170--Hb_000982_100 Hb_001936_190 Hb_001936_190 Hb_004531_170--Hb_001936_190 Hb_004117_370 Hb_004117_370 Hb_004531_170--Hb_004117_370 Hb_000012_330 Hb_000012_330 Hb_004531_170--Hb_000012_330 Hb_000173_270--Hb_000260_410 Hb_005365_010 Hb_005365_010 Hb_000173_270--Hb_005365_010 Hb_001629_120 Hb_001629_120 Hb_000173_270--Hb_001629_120 Hb_000173_270--Hb_006570_060 Hb_000173_270--Hb_044653_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.61367 12.642 28.0571 22.2283 0.638651 0.844326
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.52765 1.86386 0.393335 3.23837 25.3524

CAGE analysis