Hb_000181_380

Information

Type -
Description -
Location Contig181: 354409-355080
Sequence    

Annotation

kegg
ID rcu:RCOM_0507800
description Cytochrome c oxidase copper chaperone, putative
nr
ID XP_012084961.1
description PREDICTED: cytochrome c oxidase copper chaperone 1 [Jatropha curcas]
swissprot
ID Q9LJQ9
description Cytochrome c oxidase copper chaperone 1 OS=Arabidopsis thaliana GN=COX17-1 PE=2 SV=1
trembl
ID A0A067JW50
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20993 PE=4 SV=1
Gene Ontology
ID GO:0005758
description cytochrome c oxidase copper chaperone 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17553: 337895-354826
cDNA
(Sanger)
(ID:Location)		 004_D21.ab1: 337895-354824

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000181_380 0.0 - - PREDICTED: cytochrome c oxidase copper chaperone 1 [Jatropha curcas]
2 Hb_014834_030 0.1288943533 - - -
3 Hb_001935_150 0.1444591993 - - PREDICTED: protein transport protein Sec61 subunit beta [Jatropha curcas]
4 Hb_000975_180 0.1457412582 - - Uncharacterized protein TCM_041879 [Theobroma cacao]
5 Hb_021924_010 0.1467210325 - - hypothetical protein CISIN_1g0405342mg, partial [Citrus sinensis]
6 Hb_000463_130 0.1517993475 - - unnamed protein product [Coffea canephora]
7 Hb_006541_020 0.1543868639 - - unknown [Lotus japonicus]
8 Hb_000025_240 0.1557607085 - - PREDICTED: uncharacterized protein LOC105628964 [Jatropha curcas]
9 Hb_033376_010 0.1564745161 - - hypothetical protein POPTR_0008s02960g [Populus trichocarpa]
10 Hb_001488_400 0.1576559088 - - hypothetical protein POPTR_0018s12030g [Populus trichocarpa]
11 Hb_008748_020 0.1631191673 - - hypothetical protein B456_005G210700 [Gossypium raimondii]
12 Hb_005054_040 0.1639166085 - - PREDICTED: 60S ribosomal protein L35a-1 [Gossypium raimondii]
13 Hb_000723_250 0.1704107144 - - hypothetical protein JCGZ_16520 [Jatropha curcas]
14 Hb_004007_180 0.1720384718 - - PREDICTED: uncharacterized protein LOC105639838 [Jatropha curcas]
15 Hb_005245_070 0.1779254401 - - PREDICTED: uncharacterized protein LOC105643658 [Jatropha curcas]
16 Hb_007894_230 0.1797705101 - - 30S ribosomal protein S14, putative [Ricinus communis]
17 Hb_140543_010 0.1809174752 - - -
18 Hb_080601_020 0.1827182383 - - PREDICTED: cytochrome c oxidase copper chaperone 1 [Jatropha curcas]
19 Hb_001571_110 0.1829957437 - - PREDICTED: 60S ribosomal protein L44-like [Gossypium raimondii]
20 Hb_000130_100 0.1845734025 - - hypothetical protein CICLE_v10022662mg [Citrus clementina]

Gene co-expression network

sample Hb_000181_380 Hb_000181_380 Hb_014834_030 Hb_014834_030 Hb_000181_380--Hb_014834_030 Hb_001935_150 Hb_001935_150 Hb_000181_380--Hb_001935_150 Hb_000975_180 Hb_000975_180 Hb_000181_380--Hb_000975_180 Hb_021924_010 Hb_021924_010 Hb_000181_380--Hb_021924_010 Hb_000463_130 Hb_000463_130 Hb_000181_380--Hb_000463_130 Hb_006541_020 Hb_006541_020 Hb_000181_380--Hb_006541_020 Hb_014834_030--Hb_001935_150 Hb_000367_210 Hb_000367_210 Hb_014834_030--Hb_000367_210 Hb_002843_210 Hb_002843_210 Hb_014834_030--Hb_002843_210 Hb_187083_010 Hb_187083_010 Hb_014834_030--Hb_187083_010 Hb_003561_030 Hb_003561_030 Hb_014834_030--Hb_003561_030 Hb_001158_150 Hb_001158_150 Hb_014834_030--Hb_001158_150 Hb_007894_230 Hb_007894_230 Hb_001935_150--Hb_007894_230 Hb_000025_240 Hb_000025_240 Hb_001935_150--Hb_000025_240 Hb_001638_240 Hb_001638_240 Hb_001935_150--Hb_001638_240 Hb_009372_030 Hb_009372_030 Hb_001935_150--Hb_009372_030 Hb_002631_260 Hb_002631_260 Hb_001935_150--Hb_002631_260 Hb_000975_180--Hb_021924_010 Hb_001488_400 Hb_001488_400 Hb_000975_180--Hb_001488_400 Hb_000130_100 Hb_000130_100 Hb_000975_180--Hb_000130_100 Hb_000270_720 Hb_000270_720 Hb_000975_180--Hb_000270_720 Hb_004755_030 Hb_004755_030 Hb_000975_180--Hb_004755_030 Hb_000789_110 Hb_000789_110 Hb_000975_180--Hb_000789_110 Hb_021924_010--Hb_001488_400 Hb_023732_060 Hb_023732_060 Hb_021924_010--Hb_023732_060 Hb_021924_010--Hb_004755_030 Hb_003226_220 Hb_003226_220 Hb_021924_010--Hb_003226_220 Hb_003988_040 Hb_003988_040 Hb_021924_010--Hb_003988_040 Hb_000215_330 Hb_000215_330 Hb_000463_130--Hb_000215_330 Hb_016734_070 Hb_016734_070 Hb_000463_130--Hb_016734_070 Hb_002314_010 Hb_002314_010 Hb_000463_130--Hb_002314_010 Hb_000463_130--Hb_000130_100 Hb_000975_230 Hb_000975_230 Hb_000463_130--Hb_000975_230 Hb_003376_190 Hb_003376_190 Hb_000463_130--Hb_003376_190 Hb_006541_020--Hb_000025_240 Hb_008748_020 Hb_008748_020 Hb_006541_020--Hb_008748_020 Hb_006718_010 Hb_006718_010 Hb_006541_020--Hb_006718_010 Hb_007520_060 Hb_007520_060 Hb_006541_020--Hb_007520_060 Hb_006541_020--Hb_000367_210 Hb_000367_030 Hb_000367_030 Hb_006541_020--Hb_000367_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.70325 0.832763 2.97824 29.5806 2.05477 19.5697
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
32.8269 66.9496 12.1179 3.29716 6.96176

CAGE analysis